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iHMP? or something else?
it'd be nice if it had a specific set of genome(s)... could do the hu et al one
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The dimensions of biological data that we are able to investigate are formed by some choice of k, and we can represent biological scenarios in terms of `.kdb` files. By selecting some choice of k, we …
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Hi Diener,
would it possible to provide detailed description on the procedures that generated those GEM reference database? I found it quite useful while I am hesitating to use it in my manuscript wi…
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per luiz:
we have a new champion! https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_browser&acc=SRR21113412&display=metadata is the largest signature in wort, 4.1GB :joy:
trace.ncbi.nlm.…
ctb updated
11 months ago
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Dear Salmon Team,
Not sure if this message should go here or on the google group, sorry if it shouldn't go here.
I am trying to analyse meta-transcriptome RNAseq data to obtain genes expressio…
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* eggnog2gbk version: 0.1.0
* Python version: 3.7.4
* Operating System: CentOS-7
### Description
Hello,
I did a annotation with eggnog-mapper on my new Pacbio assembly. The annotation and t…
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Dear Greg - thanks for your continued work on this and for this follow up paper with updated pipeline. I'm the lead author of [Hermida et al. Nat Commun 2022](https://www.nature.com/articles/s41467-02…
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Thinking of adding a sample contamination check into the pipeline to get an assessment on sample purity.
Will become an increasing issue for those playing in microbiome/host genomics. But also for …
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hi,
I download the vOTU.fna (There are 5251 vOTUs in there.)data in the text and used the MGV pipeline(https://github.com/snayfach/MGV/tree/master/viral_detection_pipeline), like this
````
cond…
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Dear Developer,
I am trying to use NanoCaller on a high coverage (2000x on Microbial genomes) datasets. When I omit the sub-sampling process, the result genotypes all turned to G
##fileformat=VC…