-
Thanks for posting this public rebuttal! Good science is open science.
There's been some suggestion that removing environmental contaminants, as done in the original paper, removes the cancer sub-t…
-
Hi there,
I'm very excited to try using `decontam`, but I'm not sure it'll work with our data. I'd be grateful for any advice.
I've got the following `phyloseq` object (16 true samples and 5 con…
-
**Submitting author:** @CedricMidoux (Cédric Midoux)
**Repository:** https://forgemia.inra.fr/migale/easy16s
**Branch with paper.md** (empty if default branch):
**Version:** v24.07
**Editor:** @fboeh…
-
Dear community,
I am having memory issues while running the "Bioconductor workflow for microbiome data analysis: from raw reads to community analyses" and need some orientation. I am using this wor…
-
I applied your script on my data. As you can see in the metadata I have a column called traitment with ( CTRL , TR1 ,TR2 and TR4)
ko_abundance_file
-
Dear,
I find the ANCOM-BC approach to identify deferentially abundant taxa very interesting and was wondering if the estimated sample-specific offset term could be replaced by a known sampling frac…
-
Working with several different sequencing runs of various qualities I am trying to develop intuition for what reasonable quality filtration parameters are in the function `filterAndTrim`. The relevant…
-
The gut microbiome, mild cognitive impairment, and probiotics: A randomized clinical trial in middle-aged and older adults – Aljumaah MR, Bhatia U, Roach J, Gunstad J, Azcarate Peril MA – Journal Clin…
-
Based on the feedback from https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1253, @pbuttigieg has made some suggestions for moving some terms from GECKO to other ontologies to keep GECKO orth…
-
This issue will collect all feedback submitted via the feedback form at the end of each tutorial
----
Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…