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#### What analysis module should be updated and why?
PBTA vs TCGA TMB analysis In the works by @cansavvy #548 based on #551 and/or #257
#### What changes need to be made? Please provide enoug…
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Hi,
I just installed the latest version and ran on Python 3.5. I had the following error message:
Microsatellite Analysis for Normal-Tumor InStability (v1.0.4)
python /home/marissa/MANTIS-master/km…
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I was wondering if anyone else would be interested in adding DNA Damage and Response (DDR) indicators as (perhaps optional) bcbio QC outputs. These indicators are of interest to pharma R&D in order to…
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Dear beifang,
Sorry liberty to disturb. I'm hongsen qu and a new for MSIsenor from China. Recently I have install MSIsenor and run the command "bash run.sh" for test,then I got the MSI score 10…
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We have planned to include an analysis of tumor mutation burden as well as a comparison to the tumor mutation burden of adult tumors in TCGA. This issue is for fleshing out the analysis. The manuscrip…
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Hi,
I was wondering if you have tested MANTIS on mouse samples?
Also I was thinking since Mantis uses the MS regions generated by RepeatFinder and gets the distribution of the repeats at those lo…
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For tumor-only mode, how difference in the output file is calculated for each locus?
Thank you!
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Update to version 1.4 of the EOD algorithm
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hello,I have read this script from a paper named "Performance evaluation for rapid detection of pan-cancer
microsatellite instability with MANTIS" which writed "Once the scores for each locus are ass…
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The following NAACCR Variables are missing from the OMOP vocabulary
naaccr_item_number|naaccr_item_name|Domain|Numeric
--|--|--|--
420|Histology (92-00) ICD-O-2|Observation|no
430|Behavior (92-0…