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PaNET contains the term [electron microscopy](http://purl.org/pan-science/PaNET/PaNET01145), which uses a Wikipedia article on [electron microscopes](https://en.wikipedia.org/wiki/Electron_microscope)…
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Hello author, thank you for your very good work, I'm using a normal RGB tree annual image for semantic segmentation and it failed, I want to know if you can tell me which code to modify here, or retra…
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**Is your feature request related to a problem? Please describe.**
New laptop, I use dark mode (Mac, OSX 12.6.2), PYME look's ridiculous, which I'm "ok" with, but it's impossible to read text in some…
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Hello,
I'm using OpenSeaDragon to display a series of microscopy slices. The slices are rather tall, so when I display a ReferenceStrip, most of the space is empty. You can see a test at http://sipho…
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Running list, add to it as we think of stuff
- [ ] Planned pages we didn't get to
- [ ] [Setting up sample acquisition](https://github.com/broadinstitute/MicroscopyForBeginnersReferenceGuide/blo…
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@tischi When adding a transformation using "Registration - Enter transformation" the transform is essentially added twice to the dataset.json
This is me trying to add a transformation to the "photosy…
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Nate (@xolotl) from hypothes.is had the idea of finding similar images using [reverse image search ](https://support.google.com/websearch/answer/1325808?hl=en), the process where you input an image as…
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Hi,
thanks for creating this very useful tool! I want to apply pystackreg to register two microscopy images. The reference image has a high and the second image has a low SNR. However, after alignm…
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**AIM:** Add/modify keys in the ivadomed json config file for dealing with microscopy data
Add parameters relative to histology data, examples:
- overlap for inference
- general pixel size (resam…
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There are now a number of different representations of spatial imaging data around.
I wonder whether `imgData(spe)$data` could also accommodate for lists of eg `EBImage::Image` or `RBioFormats::Annot…