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We now have quite a lot of transition model types to choose from, some that have specific requirements (such as the random effects term in mixed effects models), and some other specific quirks (e.g. R…
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The [gpboost](https://cran.r-project.org/web/packages/gpboost/) package on CRAN by @fabsig explains itself as such:
> **Combining Tree-Boosting with Gaussian Process and Mixed Effects Models**
> A…
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Hello MUSCAT people,
I hope my message finds you fine. I have an inquiry regarding the mixed-effects models implemented using mmDS function in MUSCAT. As I understood from your paper and the packa…
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Hi,
Thank you for developing this great package. I'm wondering whether it is suitable to run nebula on pseudobulk data derived from scRNA-seq data? Many thanks!
Best,
Rui
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See [specr](https://masurp.github.io/specr/articles/getting-started.html#decomposing-the-variance-in-the-specification-curve) for some inspiration.
- bar chart of the variance in coefficient explai…
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According CMSIS SVD specification, the \ tag is mandatory on register level:
_"If the elements \, \, \, and \ have not been specified on a higher level, then these elements are mandatory on registe…
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After talking to @qiyunzhu , it is becoming clear that skbio would need to have a differential abundance method that can at least provide directionality (i.e. features increase / decrease in abundance…
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We are making use of a MeerKAT ms with one timestamp, 1 correlation and 2000 channels. The idea is to start with the ms containing unity model visibilities, corrupt it with the desired effects accordi…
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run Linear Mixed Effects Models as :
data = sm.datasets.get_rdataset("dietox", "geepack").data
md = smf.mixedlm("Weight ~ Time", data, groups=data["Pig"])
mdf = md.fit()
print(md…
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Model specification and selection
- [ ] how is it related with design?
- [ ] what is the recommended steps
- [ ] interaction?
- [ ] `lme4` and `brms` interface to specify model
- [ ] diagnostic…