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When you just pass the input-fasta URL param, Nextclade web autostarts the analysis, but it shouldn't.
It should instead just load the sequences and do auto-dataset-detection
Repro:
1. Load ht…
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When uploading around 80 mpox sequences (16MB) to Usher (both production and dev), I get the following error:
```console
Warning/Error(s):
Missing file subtree-1-mutations.txt in usher results
W…
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As we invest into meaningful automated warnings generated in the preprocessing pipeline step, wouldn't it make sense to keep those warnings around for the public to see as well?
For example, if the…
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I just tried to use G28.1 to define a position and then G28 to move to it. It appears there's something funny going on with the position feedback during a G28 move. Here's what happens:
- `g0 g53 x10 …
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Consider addition of test result Clinically assessed positive | Lab confirmed | Lab negative | Not tested. These response options are consistent with those stated in the ISARIC Core CRF. Also consider…
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I found a bug in the input pin debounce / lockout code. If an input pin changes, and then changes back before the lockout time has expired, then it's state is never updated to reflect that it changed…
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### Context
When working with data straight off ncbi, the collection date column is called `Isolate Collection date` rather than `date` - we also often call it `collection_date` to distinguish from `…
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Removable are 0 divergence below internal node - save one sequence that should be kept.
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Release date: 2024-01-15
Submitter: Viscardi et al.,
Submitting institution: Istituto Zooprofilattico Sperimentale del Mezzogiorno, Hanimal Health
Country: Italy (Sicily/Campania)
NCBI virus link…
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I'm trying out snakemake 8. If have `reason: True` in a profile. I now get:
```
snakemake: error: unrecognized arguments: --reason=True
```
This isn't documented in the migration guide so it's…