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When reading spectra from the files in the attached archive, multiple things go wrong.
Firstly, some metadata is not read correctly (missing and inserted as NA) and also the individual entries end …
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When displaying (plotms) the resulting MS file from the import, the frequencies are shifted 1/2 a SWARM chunk (i.e. ~1.8 GHz). Seems like it is the labeling, since SMA uses the frequency of the center…
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Instead of whitelisting "spectra_data"
as in
```
add_test("TOPP_FeatureFinderMultiplex_1_out1" ${DIFF} -whitelist "id=" "href=" "spectra_data" -in1 FeatureFinderMultiplex_1.tmp -in2 ${DATA_DIR_TOP…
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### Basic information
* My operating system and version: Windows 10 Pro
* My MZmine version: 3.9.0
### What happened
When doing mirror plot between 2 MS/MS spectra (Right click => show => mi…
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Formats: raw, mzXML, mgf, dta, Rdata, DeisotoperJSON.
- Where do we store this data sets - r21 (CP)?
- We need peak picked data (no profile data).
- About 3 Hela data sets
- in full size (a…
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Some mzML files are reported to have 0 MS/MS spectra. For example: [MSV000083463/Milk_final_11712.SUBJECT57.MBM.1333.mzML](https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=0a4e79b555eb4987b3cd0e03…
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Hi,
running the standard test example in shen_ISMB2014.py is fine, changing the input to "metlin_trees" will run for a while and then create the following error below. So I guess I am missing the cor…
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Hi,
i run into the following error when i try to call `plot(mse, type = "XIC")` on timfTOF data with MsBackendTimsTof:
`Error in rep(rtime(z), lns) : invalid 'times' argument`
This example sh…
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I tried to read my own msp file as follows and got the following error.
```
> library(MsBackendMsp)
> sp
kozo2 updated
5 months ago
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Import MS/MS spectrum data from different databases:
- [x] HMDB (http://www.hmdb.ca)
- [x] MoNa (issue #30)
- [ ] Massbank
Seems ChEBI, PubChem and Lipid maps don't provide spectra; can you co…