issues
search
rformassspectrometry
/
MetaboAnnotation
High level functionality to support and simplify metabolomics data annotation.
https://rformassspectrometry.github.io/MetaboAnnotation/
12
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add parameter scalePeaks to plotSpectraMirror
#116
jorainer
closed
1 month ago
1
feat: add parameter addOriginalQueryIndex to matchSpectra
#115
jorainer
closed
2 months ago
0
Add a column with the original query index to a the query object in a Matched object
#114
jorainer
closed
2 months ago
0
Check validateMatchedSpectra
#113
jorainer
opened
5 months ago
1
Parameters for comparing neutral losses in two MSMS spectra and partial score
#112
Marievlm
opened
5 months ago
2
Easy de-duplication for Matches
#111
jorainer
closed
5 months ago
0
vignette update
#110
philouail
closed
8 months ago
1
Bug in metadata reading and spectral matching
#109
hechth
opened
8 months ago
10
feat: addition of global function createStandardMixes
#108
philouail
closed
8 months ago
0
Fix: keep structure if only one adduct
#107
philouail
closed
8 months ago
0
feat: add .group_standards_iteration function
#106
philouail
closed
8 months ago
1
Utility function to define mixes of standards
#105
jorainer
closed
8 months ago
1
fix: update objects to match updates in Spectra
#104
jorainer
closed
9 months ago
0
feat: add queryIndex and targetIndex functions
#103
jorainer
closed
10 months ago
0
Add support to match m/z and rt against Spectra
#102
jorainer
closed
10 months ago
0
[fix] fix issue on vignette (issue #100)
#101
RemyDeB
closed
9 months ago
2
Issue with addProcessing MatchedSpectra class
#100
RemyDeB
closed
11 months ago
2
Add possibility to select spectra variable for RT matching in matchSpectra
#99
jorainer
closed
1 year ago
0
Allow to define spectraVariable for RT comparison in MS2 data matching
#98
michaelwitting
closed
9 months ago
0
Update readme
#97
jorainer
closed
1 year ago
0
docs: require mzR package for vignette
#96
jorainer
closed
1 year ago
0
Error for matchSpectra: "Not implemented for MsBackendMassbankSql."
#95
YANGJJ93MS
closed
1 year ago
13
Minor performance tweaks and additional documentation
#94
jorainer
closed
1 year ago
1
Performance issue with matching functions
#93
Adafede
opened
1 year ago
16
Integrate MetFrag
#92
jorainer
opened
1 year ago
1
No MassBank support in AnnotationHub?
#91
pratarora
closed
1 year ago
3
scoreVariables function
#90
andreavicini
closed
1 year ago
0
Support matching of spectra against annotation sources
#89
jorainer
closed
1 year ago
0
Matching against several annotation resources
#88
jorainer
opened
1 year ago
2
filterMatches, ScoreThresholdParam
#87
andreavicini
closed
1 year ago
7
Additional filterMatched filters
#86
jorainer
opened
1 year ago
0
matchApply
#85
andreavicini
closed
1 year ago
1
matchApply function to allow applying any function to each match
#84
jorainer
closed
1 year ago
2
Refactor filterMatches
#83
jorainer
closed
2 years ago
0
Extend `filterMatches` framework
#82
andreavicini
closed
2 years ago
2
Extend filterMatches framework
#81
jorainer
closed
2 years ago
2
Support for SummarizedExperiment and QFeatures
#80
andreavicini
closed
2 years ago
0
refactor: improve mirror plot in validateMatchedSpectra
#79
jorainer
closed
2 years ago
0
packages for function validateMatchedSpectra
#78
chufz
closed
2 years ago
2
Error when matching ion modes
#77
michaelwitting
closed
2 years ago
2
Issue #69 fixed.
#76
andreavicini
closed
2 years ago
0
refactor: plotly: use segments instead of bars
#75
jorainer
closed
2 years ago
0
fix: fix issue in selecting target rows (issue #73)
#74
jorainer
closed
2 years ago
0
validateMatchedSpectra crashes
#73
michaelwitting
closed
2 years ago
5
refactor: refactor validateMatchedSpectra
#72
jorainer
closed
2 years ago
0
Michael shinydevel
#71
michaelwitting
closed
2 years ago
1
fix: small updates in shiny app
#70
jorainer
closed
2 years ago
0
matchedData not working for all result objects
#69
jorainer
closed
2 years ago
1
Rename matchMz to matchValues and some doc updates
#68
jorainer
closed
2 years ago
2
Support for QFeatures
#67
michaelwitting
closed
2 years ago
11
Next