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I am assembling a fairly homozygous polyploid plant genome with and without -l0 (purge duplicates) flag using ~30x CCS data. I am getting slightly different N50 and assembly size in the *.bp.p_ctg.gfa…
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Hello
I am assemblying a maize genome recently. I have 250G pacbio sqeuel II reads with reads N50 25k, it quality seems well. But, when I corrected my subreads with FALCON, I got 84G corrected rea…
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**Thin Road Network (TRN)**
TRN er ett verktøy i ArcGIS Pro for å beholde uttrykket men samtidig fjerne mindre viktige veier.
https://pro.arcgis.com/en/pro-app/3.1/tool-reference/cartography/thin-ro…
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- [ ] En el marco teórico describir las siguientes dos referencias con Zotero
- [ ] Escoger algun compuesto de interés del artículo Xu et al 2021
- [ ] Reproducir partes de artículo de Shi 2022
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Hi,
Thank you very much for developing this amazing tool!
Recently, I have tried to run hifiasm (v0.16.1) on CCS reads that subsampled to different coverage with rasusa, and noticed that the dif…
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Excuse me, is this step ALLHiC_corrector necessary?
Dear Professor,thank you for your excellent tool. For my simple diploid genome,(,2n=42) I got better results by Allhic.
Genome is assembled from…
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Similar to YAML flow style but allowing the user to override on a per-node basis.
eg. YAML Block Style:
```
flyblocks:
minecraft:wool:
- 50.0
- 100.0
? - minecraft:chest
…
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For three different assemblies, the output from YAHS is exactly the same as the input assembly. I used the Arima-HiC Mapping Pipeline to map my HiC reads to my assemblies. Assemblies are either HiFi-o…
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hello, I get two results of the Hi-C integrated assembly :
hic.hap1.p_ctg.gfa and hic.hap2.p_ctg.gfa
hic.hap1.p_ctg.gfa :354 contigs, N50 28114168bp, N75 28114168bp
hic.hap2.p_ctg.gfa :180 …
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I am assembling a plant genome (~250M) with hifiasm. First, I extract the ccs reads using : ./bam2fasta D01.ccs.bam -o D01.ccs.fasta ( Is it right for extract hifi reads ?)
The total CCS reads (D01…