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* pvactools version: 3.1.0
* Python version: 3.6.2
* Operating System: Red Hat 4.8.5-44
**Describe the bug**
Hi there,
I encountered a difficult feature when using `pvacbind`. The `*parsed.ts…
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Hi,
Thanks for developing a great workflow manager in Python!
I'm currently trying to implement a pipeline that performs a scatter and merge operation, however, I've been encountering issues and…
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* pvactools version:
* 3.0.4
* Python version:
* 3.8.13
* Operating System:
CentOS 7
**Describe the bug**
A clear and concise description of what the bug is.
I run pvacseq on a VCF file, ena…
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The pipeline went fine all the way until step number 12 and I got this error:
Do you think it's because the pVACseq is deprecated?
`icbi/nextNEOpi execution completed unsuccessfully!
The exit s…
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In the development branch, Modelling_functions.py, line 254 the -f option is not specifiied when feeding the input to netMHCpan. This does not cause any issue but cause netMHCpan to not report the inp…
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Hi,
Thanks for developing a great tool!
I was wondering:
1. What is the motivation for focusing only on predicting binding affinity (and presentation) to MHC Class I and not Class II?
- Is…
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- Expected Behavior:
Find the version of installed NetMHCIIpan automatically
- Current Behavior:
> ...../PANDORA/PANDORA/Pandora/Modelling_functions.py in predict_anchors_netMHCIIpan(peptid…
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Expected Behavior:
> Download the working `data` folder for netMHCIIpan. Find the correct path for downloading this data.
Current Behavior:
> gzip: data.tar.gz: No such file or directory
> t…
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## Expected Behavior:
Model all the cases listed in the .tsv file
## Current Behavior:
Error:
> WARNING: no anchor positions provided. Pandora will predict them using netMHCIIpan.
> Trace…
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