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### Description of feature
Would it be possible to update the V1200 scheme to the newest version (v2 currently) that allows better sequencing of Omicron?
The V1200_v2 files can be found here from…
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Hello @aakechin , this may seem like an odd question - but is it possible to target specific SNPs in the reference genome, rather than try to avoid them? The hope is to get one primer (it doesn't matt…
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We should use a consistent unix tutorial each year, building on what we learned the previous year.
Some things we learned this year:
- [ ] Students generally struggle with VI or any terminal-based te…
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Hello,
Can someone help me to understand the QC process?
Based on this link:
https://www.bioconductor.org/packages/release/workflows/vignettes/GeoMxWorkflows/inst/doc/GeomxTools_RNA-NGS_Analysi…
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** New feature**
Add new flag `--germline-example` to `snappy-start-project`. Usage:
```
snappy-start-project --directory PATH_TO_PROJECT --germline-example
```
**Expected behaviour**
Scri…
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Hi
I'm trying to use HOME for DMR analysis
I have 6 replicate for WT and 4 replicate for mutant
When I run HOME-pairwise, I got the following error message
[lee@ko44 HOME]$ ${HOME_DMR}/HOME-pair…
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Hello,
I would use your software on the maize genome B73 RefGen_v3, is it possible to add it to your annotation database?
Thanks in advance,
Best regards,
Johan35
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Hi there!
We used Jellyfish and GenomeScope on pair-end NGS data to perform k-mer analysis on a new sequenced species of unknown genome size and unknown ploidy nature.
When I've run Genomescope…
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Following our discussion with @nekrut , I am creating an issue to outline essential components for creating a barebones HIV (or other short RNA virus) genomic analysis pipeline.
Key steps for ampl…