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你好，如果我使用nnunet只想进行肺结节推理的话，我看需要一个flag是plan_path，…
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I am having trouble shoot problems in windows 11, could you help me
[Python] Failed to load the segmentation.
[Python] Something went wrong during the nnUNet processing.
[Python] Please check t…
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Dear nnunet community,
I want to use the network_architecture.pdf generated by nnunet to draw the diagram from my research article. Can you please advise me on how to create such a diagram in Late…
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Hi,
I am trying to set up an environment to run nnunet (v1). I initiallly installed python 3.8.10 and torch==1.11.0+cu113.
However, in both a conda as well as in a venv, I am facing following e…
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Hi,
I'm trying to finetune nnUNet for a brain tumor segmentation task using pretrained weights from Task082_BraTS2020. My data consists of brain MRI images with 4 input modalities, and the labels m…
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In this issue, I document my experiments in training and testing a region-based nnUNet.
The model takes into input a Nifti image and outputs the spinal cord (value=1) and the MS lesions (value=2).
…
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I have used this data with nnUNet, but I always get the error " case does not contain any foreground classes spine_254" ,with the help of Google, I find this only happens if some image does not contai…
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Hi
First of all - thanks for making this extremely useful extension available.
I have installed the app without issues and ran it on my own trained nnUNet. It works very well. I just have a ques…
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I have a problem that I can't solve for the time being. Can you give me a hand?
Traceback (most recent call last):
File "/home/nkhao/anaconda3/envs/nnunet/bin/nnUNet_plan_and_preprocess", line 3…
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when I Preprocessing dataset, perform /XXXXXX...../nnUNet/nnUNet/nnunetv2/experiment_planning$ python plan_and_preprocess_entrypoints.py -d 002 --verify_dataset_integrity
error as shown:
Fing…