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I'm not deeply entrenched in the STC activity yet, so I'm not sure how tightly controlled you want things in the developing document. Here's a use case we are pursuing with the ESIP COR resource.
I p…
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## Describe the issue
I'm trying to filter my vcf with filter_vep with ontology option. However, it seems that this requires a database connection, which I would then get a `Can't connect to MySQL se…
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When a logic is downloaded with mime type application/rdf+xml, Ontohub should repsond with an xml/rdf file representing the logic, see items with tag dol:logic at https://github.com/ontohub/OOR_Ontohu…
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SWO is registed with OBO so you might think it has OBO prefixes, but this isn't the case:
* https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2307
Example CURIE on https://bioregistry.io…
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In https://github.com/ga4gh/schemas/issues/621 @mcourtot mentions
> With respect to the ontology source identification. At the moment, there is:
> Ontology source name - the name of ontology from whi…
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Per M Haendel:
I think we need a central, computable metadata registry for approved standards. This information can then be automatically ingested by other systems. For example, we have a really ni…
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| Term | Definition | Distinguish from |
| ----- | --------- | ------- |
| OBO Ontology | Ontology developed in accordance with OBO principles and accepted to be listed in the OBO Ontology Library. …
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## Description
This issue is not aiming for new or extended functionalities, but assuring all changes are implemented, that are required to ensure the compatibility/interoperability with depending com…
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Hi, we have a number of problems with this ontology for the OBO registry and its downstream applications, see: https://github.com/OBOFoundry/OBOFoundry.github.io/issues/208
1. The DINTO_2 ontology doe…
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I've been doing a lot of prefix mapping across various registries and been pleasently surprised to find few conflicts. Unfortunately, both the Geographical Entity Ontology and the Gene Expression Omni…