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MSID: 94658
Version: 2
Preprint DOI: https://doi.org/10.1101/2023.11.16.567478
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
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**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.7
- OS name and version (`lsb_release -ds`): Ubuntu 20.04.1 LTS
**To Reproduce**
Exact bcbio command you have used:
```
bcb…
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Hello everyone, especially hg38 reference genome users!
Now bcbio has hg38 support for almost 5 years!
http://bcb.io/2015/09/17/hg38-validation/
However, many user were still on GRCh37/hg19, be…
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Hi! I have a problem with running this pipeline. It seems that it incorrectly chooses memory requirements for files. This is especially problematic with very big files. My biggest file during tests wa…
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### Lesson Title
Introduction to Bioinformatics workflows with Nextflow and nf-core
### Lesson Repository URL
https://github.com/carpentries-incubator/workflows-nextflow
### Lesson Website URL
ht…
gperu updated
2 months ago
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problem, installing from scratch on our HPC fails while trying to install a perl packages:
```
Encountered problems while solving:
- package perl-encode-locale-1.05-pl526_6 requires perl >=5.26.…
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Using command `stub` blocks in Nextflow is useful when developing syntax and quickly testing pipelines. However, its use within nf-core is limited because the vast majority of nf-core modules do not h…
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I am running razer3 using the docker image fred2-optitype-release-v1.3.1.img from [docker hub](https://hub.docker.com/layers/fred2/optitype/release-v1.3.1/images/sha256-f36366701c91dd10c30801fa323a845…
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Dear nextNEOpi developers:
I use the HPC to run nextNEOpi test sample, I got the error below and I checked the rna_mapped_1.bam and rna_mapped_2.bam file are empty. Please help to identify and solv…
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Is there a way to use our own set of MHC alleles?