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aria-pressed states:
"A value of mixed means that the values of more than one item controlled by the button do not all share the same value. Examples of mixed-state buttons are described in the WAI-A…
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Hi,
I tried to run geneidx. With singularity, I failed to pull the image - but possibly that's an issue on my own server.
```
Error executing process > 'param_value_selection_workflow:getParam…
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Hi,
I have this humble question, newbie to this domain of container.
I have all pre-requested already installed
- Docker
- Singularity
- Nextflow
- and the input data
The first thing I did I …
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[here](https://pyrodigal.readthedocs.io/en/stable/install.html)
I tried to run pytest from the project directory, but got:
```
collected 0 items / 9 errors …
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Hello,
I am running TE-Aid with the default options, but it doesn't seem to find any ORF in any of my consensus sequences. On the exit I see these messages (indented by me). Do they mean that I am …
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Hi there,
I've been running GECCO on a few annotated genomes with `--cds-feature CDS` and sideloaded them in antiSMASH without problems. However, there is one genome with multiple CDS in several ge…
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Substitute the ORF finder (FragGeneScan) with a better one (Prodigal).
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Hi, I am trying pyrodigal using the following conditions:
gorf = pyrodigal.OrfFinder(closed=True,
min_gene=33,
max_overlap=0) …
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Hi Richard,
I am just wanting to follow up on whether I've understood this correctly: 'Comparing your Iso-Seq data to the reference annotation (or short read RNAseq annotation)'
I have short rea…
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I am running TransDecoder 5.5.0 (installed using conda) to predict plant proteins from transcripts.
I used the commands:
```
TransDecoder.LongOrfs -t transcripts.fasta -m 1
TransDecoder.Predict -t…