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GenomeRIK
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tama
Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
GNU General Public License v3.0
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Understanding the behaviour of duplicate transcript groups
#139
omarelgarwany
opened
1 month ago
0
Help understanding tama_remove_fragment_models.py discard result
#138
idarolti
opened
1 month ago
0
tama_merge -s
#137
tky199996
opened
2 months ago
0
/public/home/yqming/Software/tama-master/tama_collapse.py
#136
wangguiqian
opened
2 months ago
0
tama_merge
#135
tky199996
opened
3 months ago
0
Gid source after tama_merge
#134
tky199996
opened
4 months ago
0
tama_merge -s
#133
tky199996
opened
4 months ago
0
How to convert G1, G2, G3 obtained after merge into normal gene names
#132
tky199996
opened
5 months ago
0
invalid feature coordinates (end<start!) at line
#131
tky199996
opened
6 months ago
1
tama_merge.py filelist
#130
tky199996
closed
6 months ago
0
tama_collapse.py，gene_id
#129
tky199996
closed
5 months ago
2
tama_merge.py
#128
tky199996
closed
6 months ago
5
tama_merge.py
#127
tky199996
closed
6 months ago
3
TAMA collapse IndexError
#126
mainciburu
opened
6 months ago
4
tama_merge
#125
tky199996
closed
6 months ago
0
python3.11，NameError: name 'xrange' is not defined. Did you mean: 'range'?
#124
tky199996
closed
6 months ago
13
install
#123
tky199996
closed
6 months ago
0
tama_collapse.py
#122
tky199996
closed
6 months ago
0
About Tama collpase bed file "transcript_id"
#121
KerenElience
closed
6 months ago
2
Issue with tama_cds_regions_bed_add.py
#120
roybarkan2020
closed
7 months ago
0
OSError: Samtools not found!
#118
Mr-Lawrence-521
closed
8 months ago
0
Estimate of processing time
#117
Caffeinated-Code
opened
9 months ago
1
Repeatmasker on iso seq data.
#116
shri1984
opened
9 months ago
0
How to format .bed generated by PASA to TAMA merge-acceptable .bed
#115
Jung19911124
opened
9 months ago
2
'dict_keys' object has no attribute 'sorted'
#114
roybarkan2020
closed
9 months ago
1
Error with exon end earlier than exon start
#113
ESWRKJ
closed
9 months ago
18
Remove single read models
#112
mainciburu
closed
9 months ago
2
Error, no groups found!
#111
priyanka5795
opened
10 months ago
2
Read Support/Saturation Curve issue; tama_sampling_saturation_curve.py --> "Error with read support multiple genes!" [non-unique transcript names]
#110
mrendleman
closed
11 months ago
1
Help understanding the no_cap option
#109
Caffeinated-Code
closed
9 months ago
1
tama parser with diamond result not picking the top hit
#108
olechnwin
closed
9 months ago
1
output transcript in fasta
#107
Juniperlus
closed
9 months ago
1
tama_remove_single_read_models_levels.py does not remove transcripts
#106
sanyalab
closed
9 months ago
2
tama_collapse.py error TypeError: a bytes-like object is required, not 'str'
#105
luckyvivi
closed
9 months ago
1
TAMA Collapse assigns truncated reads to wrong transcript
#104
cathycoutu
closed
9 months ago
3
IndexError: list index out of range when running tama_orf_blastp_parser.py
#103
olechnwin
opened
1 year ago
1
Error with duplicate trans id
#102
olechnwin
closed
9 months ago
15
tama_format_id_filter.py : IndexError: list index out of range
#101
olechnwin
closed
1 year ago
11
question on merging annotations
#100
olechnwin
closed
1 year ago
5
Different results when running Tama on subset vs full BAM file
#99
skudashev
closed
1 year ago
3
SQANTI/Pigeon classification on merged files
#98
sum732
closed
1 year ago
10
tama_collapse.py bug: var_pos at last position in scaffold not taken into account and throws IndexError: list index out of range
#97
NLykoskoufis
closed
1 year ago
2
TAMA ORF seeker
#96
bijendrabio
closed
1 year ago
1
IndexError: list index out of range
#95
gouwei1
closed
1 year ago
0
tama_merge IndexError: list index out of range
#94
olechnwin
closed
1 year ago
11
TAMA Merge Parameters
#93
OEveSalar
closed
1 year ago
1
TAMA GO: ORF and NMD predictions
#92
anchonggen
closed
1 year ago
1
Versioned package release request tama
#91
jayramr
opened
1 year ago
4
TAMA GO: Read Support
#90
anchonggen
closed
1 year ago
9
tama bed to gff or gtf
#89
bijendrabio
closed
1 year ago
1
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