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Thank you all for developing CoRAL. I have a question regarding the error message during infer_breakpoint_graph step and wonder if there are any suggestions you could kindly have:
Error message:
T…
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Hi @hannespetur,
Sorry I might have missed this somewhere. Does Graphtyper perform SNV discovery from PacBio or Nanopore data or is this something still under development?
Thank you
Kind reg…
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**Describe the solution you'd like**
Handle it like other raw models in order to register it via ETL routines. Collect requirements/find out which metadata is included and can be used.
**Additiona…
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I download all ftp files from article"Test Illumina+Pacbio data set for MaSuRCA" in"MaSuRCA genome assembly package" website. After run the assemble.sh I got these error
[rom1025tyc@clogin4 yeast]$…
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I think there might be a memory leak when running "encoding_dataframes.encode_crispresso_allele_table" where the memory pressure gradually increases. I think this might be because of the high number o…
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Combined ES + GS data/ short and longreads in a single project
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Hi,
I am trying to load a gtf file but run into an error I could not solve using the importGTF function:
>
> Step 1 of 10: Checking data...
> Step 2 of 10: Obtaining annotation...
> imp…
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Hi, I ran this command to perform Isoquant quantification with the aim of obtaining transcript quantification results for all samples: isoquant.py --reference genome.fa --genedb ./merge.combined.gtf -…
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# Bug description
Running SVIM on some long read PacBio bam files, I get an error from tabix, that the resulting sequences are unsorted.
```bash
[E::hts_idx_push] Unsorted positions on sequence #1:…
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Hi,
Thank you for the nice tool! I am recently using severus for SV calling and was attracted by Wakhan. However, when I tried to run it on my Pacbio data, an error was reported.
The error is:
`…