-
If PacBio data is passed in as a fasta file, the `@RG` annotation is lost, and Arrow gccp will complain
```
gcpp ERROR: [pbbam] read group ERROR: basecaller version is too short
```
Maybe can…
-
Hi Mchaisso
phasedSV is very useful, but when I was trying to install phasedSV, I encountered many missing libraries, if you can provide a docker image will be very helpful!
thank you!
Jeff C …
-
Hi @hannespetur,
Sorry I might have missed this somewhere. Does Graphtyper perform SNV discovery from PacBio or Nanopore data or is this something still under development?
Thank you
Kind reg…
-
Hello, I'm sorry to bother you. May I know how to do transcriptome prediction now that I only have full-length transcriptome data?
I have seen many articles on downstreaming the data and then using …
-
**Describe the solution you'd like**
Handle it like other raw models in order to register it via ETL routines. Collect requirements/find out which metadata is included and can be used.
**Additiona…
-
Hello
I use hifiasm to assemble the Pacbio hifi data, and then use allhic to anchor the obtained haplotypes to the chromosomes. my genome is diploid, and 9 chromosomes (2x=2n=18). When I use K=9 an…
-
`chr5 20023782 Minda_110 N N]chr5:155777976] . PASS SVLEN=135754194;SVTYPE=BND;SUPP_VEC=ILL_MantaBND:95378:0:1:1:0:0:0,ILL_gridss90bb_818h,PB_r_282_1,ONT_r_180_1,PB_severus_INV5636,ONT_severus_INV6501…
jzook updated
1 month ago
-
Hi,
Thank you for the nice tool! I am recently using severus for SV calling and was attracted by Wakhan. However, when I tried to run it on my Pacbio data, an error was reported.
The error is:
`…
-
-
Dear,
I succeeded a very similar first run with docker (ONT assembly all the rest the same). The ONT run ended after few hours and gave results.
The second run hangs on some prothint record (Pac…