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Is it possible to modify parts of a PDB or rewrite it entirely with this? Browsing through the docs, it looks like it only reads PDBs.
The reason I ask is that I'm considering rewriting my C++ tool…
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Hi,
I'm trying to use the prody_align function to align two selections and if I use mmCIF files as input the calcRMSD function would return a `float divison by zero` exception while if I use the p…
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Hello, `test_pdb_used_outside_test` and `test_pdb_used_in_generate_tests` are failing with Python 3.13 beta 2 on Fedora Rawhide. The same error was observed also with pytest 7.4.3.
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+ /builddir/…
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Sometime we need to analyze entanglement for some database, which contains a large number of PDB structures, each structure has different number of residues, then residues indices ....
Everytime Ju…
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### Kyverno CLI Version
1.12.3
### Description
According to https://kyverno.io/docs/kyverno-cli/usage/test/#test-subset-of-resources
option test-case-selector allows to run a subset of tests based…
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### What happened?
While reviewing https://github.com/kubernetes/enhancements/pull/3089 @smarterclayton suggested that PDBs should be opaque to the backing controllers for the pods. As of now, PDBs…
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Hi all,
I need to add insertion codes into my PDB and I don't know how to add them. In my search I just found on PDB-tools an option to remove them. I want to ask if PDB-tools have any option to add…
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I am getting "SSL: CERTIFICATE_VERIFY_FAILED" during db startup, could you please help.
Find below my full log,
[user@BRL72J3 ~]$ podman logs -t f2f6d724008ad02027d72c8c393a8221cafe9b5c3a1bbd08e…
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## Issue Description ##
I have the MAUI extension. When I launch my MAUI/BlazorHybrid app from VSCode I get this error: The program '[1234] XXX.exe' has exited with code -1073741189 (0xc000027b).
…
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### Description
`cupyx.scipy.ndimage.distance_transform_edt` accepts numpy arrays as indices; For a cupy array it raises
```
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ev-br updated
13 hours ago