haddocking pdb-tools issues

haddocking / pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

https://haddocking.github.io/pdb-tools/

Apache License 2.0

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issues

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How to add insertion codes on PDB

#165 Sofia-FR opened 1 month ago
1
Added pdb_selb to filter by B-factor values

#164 ahmedselim2017 opened 2 months ago
0
pdb_selb

#163 amjjbonvin opened 3 months ago
0
Update build_and_test.yml to remove Py2 images.

#162 JoaoRodrigues closed 6 months ago
3
Adds missing `ENDMDL` on `HETATM` in `pdb_tidy`

#161 joaomcteixeira closed 6 months ago
1
pdb_tidy discards ENDMDL statements for HETATM ensembles

#160 amjjbonvin closed 6 months ago
0
pdb_merge should discard MODEL/ENDMDL statements

#159 amjjbonvin opened 11 months ago
0
fix bug pdb_selaltloc.py

#158 ShintaroMinami opened 11 months ago
0
Remove support to py3.6

#157 joaomcteixeira closed 1 year ago
0
[FEATURE] improved/corrected `pdb_selaltloc` tool

#156 joaomcteixeira opened 1 year ago
2
`pdb_tidy` removes the `TER` record between chains and removes last `ENDMDL` in a multi-model PDB

#155 rvhonorato opened 1 year ago
8
first draft of solution to selaltloc bug

#154 mgiulini closed 1 year ago
7
pdb_selaltloc removes residues with (only) alternate locations

#153 mgiulini opened 1 year ago
22
Question on `pdb_keepcoord`

#152 joaomcteixeira closed 1 year ago
4
Inverts `-strict` behaviour in `pdb_tidy`

#151 joaomcteixeira opened 1 year ago
0
Improve `pdb_merge` to include `TER`s and `END` lines

#150 joaomcteixeira opened 1 year ago
13
pdb_merge not adding END statement

#149 amjjbonvin closed 3 months ago
1
pdb_fixinsert can't handle the PDB, which has missing residue in insertion code region

#148 hw-protein opened 1 year ago
3
Improve `pdb_mkensemble` to work as lib

#147 joaomcteixeira opened 1 year ago
0
pdb_mkensemble includes the PDB filename when using a redirect

#146 amjjbonvin closed 1 year ago
6
Use HEADER info if available to name FASTA records.

#145 JoaoRodrigues closed 2 years ago
0
Implement pdb_selmodel for model selection in ensemble PDB files.

#144 JoaoRodrigues closed 2 years ago
0
Refactor CI

#143 JoaoRodrigues closed 2 years ago
7
Update and rename ci.yml to build_and_test.yml

#142 JoaoRodrigues closed 2 years ago
1
Add build and coverage to every OS. Drop codecov.

#141 JoaoRodrigues closed 2 years ago
0
Correct `pdb_tidy` when used with lists in lib

#140 joaomcteixeira closed 2 years ago
1
Re-add Py2.7 to CI. Explicit codecov configs

#139 JoaoRodrigues closed 2 years ago
1
Corrects `selaltloc` for python 2.7 using OrderedDict

#138 joaomcteixeira closed 2 years ago
1
Adds missing file in `pdb_selaltloc` tests

#137 joaomcteixeira closed 2 years ago
0
Correct behaviour and improves `selaltloc`

#136 joaomcteixeira closed 2 years ago
0
`pdb_wc` should report the list of chain IDs of the PDB

#135 joaomcteixeira opened 2 years ago
0
Help with badly formatted PDB file

#134 LilySnow closed 2 years ago
3
Development suggestion: Behaviour of pdb_reres and pdb_shiftres

#133 KasperBuskPedersen closed 2 years ago
3
Increase footer size in the web page

#132 rvhonorato closed 2 years ago
3
Corrects behavior with `ANISOU` lines in `pdb_selaltloc`

#131 joaomcteixeira closed 2 years ago
3
`pdb_selaltloc` is breaking with ANISOU lines for `7K2U.pdb`

#130 joaomcteixeira closed 2 years ago
0
add MANIFEST file to better control which files are packaged to PyPI

#129 joaomcteixeira closed 2 years ago
1
Bug in the `pdb-tools` website

#128 joaomcteixeira closed 2 years ago
3
improve `pdb_wc` when using as library.

#127 joaomcteixeira opened 2 years ago
0
`ValueError: invalid literal for int() with base 10: '?'` when handling `HETATM`

#126 multimeric closed 2 years ago
7
Possible bug in Molprobity

#125 Mr-MOPAC closed 2 years ago
4
`pdb_fetch` could return `.cif` if the `.pdb` is not available

#124 rvhonorato closed 2 years ago
3
Better naming of pdb_tofasta entries

#123 sbliven closed 2 years ago
2
Implement `pdb_selmodel`

#122 rvhonorato closed 2 years ago
1
Consider HEXADECIMAL for `pdb_fromcif`

#121 joaomcteixeira opened 2 years ago
1
`pdb_rplresname` should accept several substitutions maps

#120 joaomcteixeira opened 2 years ago
1
Correct `MODEL`, `END` and `ENDMDL` in `pdb_tidy`

#119 joaomcteixeira closed 2 years ago
1
`pdb_tidy` does not correct `MODEL` records

#118 rvhonorato closed 2 years ago
1
Improved `pdb_selaltloc`

#117 joaomcteixeira closed 2 years ago
0
Behaviour of `pdb_selres`

#116 TianyiShi2001 closed 2 years ago
3