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haddocking
/
pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
https://haddocking.github.io/pdb-tools/
Apache License 2.0
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`pdb_tidy` does not correct `MODEL` records
#118
rvhonorato
closed
2 years ago
1
Improved `pdb_selaltloc`
#117
joaomcteixeira
closed
2 years ago
0
Behaviour of `pdb_selres`
#116
TianyiShi2001
closed
2 years ago
3
Behaviour in `selaltloc`
#115
joaomcteixeira
closed
2 years ago
1
Tool to convert between atom names conventions
#114
joaomcteixeira
closed
1 year ago
4
`pdb_renameatom` - Renames atoms.
#113
joaomcteixeira
closed
3 years ago
4
Adding pdb_addter
#112
andrewsb8
opened
3 years ago
15
Issue with doctools.py
#111
andrewsb8
closed
3 years ago
6
`pdb_fixinsert` and its impact on numbering
#110
aanastasiou
closed
3 years ago
3
Adjust fhandle names to files and iterables.
#109
joaomcteixeira
closed
3 years ago
1
Add GitHub actions for testing
#108
joaomcteixeira
closed
2 years ago
3
Facilitates use of pdb-tools as a library
#107
joaomcteixeira
closed
3 years ago
4
Using pdb-tools as a lib (also)
#106
joaomcteixeira
closed
3 years ago
0
New tools for protein, nucleic, carbo, ligands
#105
joaomcteixeira
closed
3 years ago
6
molprobity.py gives a TypeError
#104
jbibbe4
closed
3 years ago
2
Adding option for subcommands
#103
joaomcteixeira
closed
3 years ago
1
sub commands?
#102
jyesselm
closed
3 years ago
18
Add option to pdb_tidy to only add TER between different chains
#101
amjjbonvin
closed
2 years ago
3
Migrate to GitHub Actions
#100
joaomcteixeira
closed
2 years ago
1
Ignore residues with non-matching altlocs when only one is present.
#99
JoaoRodrigues
closed
3 years ago
2
Updated citation in the web page.
#98
JoaoRodrigues
closed
3 years ago
0
Update documentation tooling and added cookbook
#97
JoaoRodrigues
closed
3 years ago
1
Ignore residues with non-matching altlocs when only one is present.
#96
JoaoRodrigues
closed
3 years ago
6
Adds for loop example to docs
#95
joaomcteixeira
closed
3 years ago
5
Coot can't open the output file of pdb_merge
#94
1ut
closed
3 years ago
2
pip install does not install LICENSE file
#93
Gerardwx
closed
3 years ago
7
renamed pdb_delinsertion
#92
joaomcteixeira
closed
3 years ago
12
pdb_delinsertion - naming is confusing
#91
amjjbonvin
closed
3 years ago
0
pdb_selatlloc fails on single locs
#90
joaomcteixeira
closed
3 years ago
1
treatment of MASTER lines
#89
joaomcteixeira
closed
3 years ago
2
Chain selection should be case-sensitive
#88
JoaoRodrigues
closed
3 years ago
1
Fix pdb_selres on piped input files
#86
JoaoRodrigues
closed
4 years ago
7
Fix count of HETATM to include all HETATM atoms, not residues.
#85
JoaoRodrigues
closed
4 years ago
1
Updated citation from biorxiv to F1000R
#84
JoaoRodrigues
closed
4 years ago
0
Change import in test to support Py2
#83
JoaoRodrigues
closed
4 years ago
0
Improve documentation updates
#82
JoaoRodrigues
closed
3 years ago
1
Adds tool pdb_chainbows to sequentially assign chain identifiers
#81
JoaoRodrigues
closed
4 years ago
4
Added -strict option to pdb_tidy to avoid adding intra-chain TERs
#80
JoaoRodrigues
closed
4 years ago
3
pdb_reatom misaligning with TER lines
#79
edarl
closed
4 years ago
3
[SKIP] updates CONTRIBUTING
#78
joaomcteixeira
closed
4 years ago
14
[SKIP] add pdb_uniqname to docs index
#77
joaomcteixeira
closed
4 years ago
2
Deleted unreachable/duplicated return statements
#76
JoaoRodrigues
closed
4 years ago
1
[FEATURE] Added new tool to assign unique names to HETATM atoms + tests
#75
JoaoRodrigues
closed
4 years ago
6
Ignores CONECT lines in pdb_tidy
#74
joaomcteixeira
closed
4 years ago
2
input PDB file
#73
fedeserral
closed
4 years ago
2
Handling CONECT entries
#72
joaomcteixeira
closed
4 years ago
4
Adds numbers to equal atom names in HETATM entries
#71
joaomcteixeira
closed
4 years ago
6
Add chain IDs on missing chains with TER
#70
joaomcteixeira
closed
4 years ago
9
pdb_reres was ignoring MODEL lines
#69
joaomcteixeira
closed
4 years ago
4
pdb_reres removes the MODEL tag from multi-model PDB files
#68
PhilippJunk
closed
4 years ago
4
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