haddocking pdb-tools issues

haddocking / pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

https://haddocking.github.io/pdb-tools/

Apache License 2.0

372 stars 113 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

A rare case for pdb_delinsertion

#64 joaomcteixeira opened 4 years ago
2
Fixes delinsertion on consecutive residues with the same name

#63 JoaoRodrigues closed 4 years ago
3
pdb_delinsertion

#62 joaomcteixeira closed 4 years ago
1
Reset residue numbering for each model

#61 rvanasa closed 4 years ago
3
Switched PyPi server to production.

#60 JoaoRodrigues closed 4 years ago
1
Edit pdb_wc documentation

#59 JoaoRodrigues closed 4 years ago
1
Add automatic versioning and packaging

#58 JoaoRodrigues closed 4 years ago
1
Testing Autopackage

#57 JoaoRodrigues closed 4 years ago
0
avoid IndexError: string index out of range

#56 mukhyala closed 4 years ago
1
avoid IndexError: string index out of range

#55 mukhyala closed 4 years ago
0
Fixed MODEL line bug when model number > 10

#54 JoaoRodrigues closed 4 years ago
1
enhancement of pdb_wc

#53 joaomcteixeira closed 4 years ago
4
Semantic Versioning

#52 JoaoRodrigues closed 4 years ago
16
Improved pdb_wc

#51 JoaoRodrigues closed 4 years ago
2
Escapes </> properly

#50 JoaoRodrigues closed 4 years ago
2
Quarantine makes you crazy and forgetfull of basic HTML rules.

#49 JoaoRodrigues closed 4 years ago
1
Breathe docs, breeeeaaaaatheee!!!

#48 JoaoRodrigues closed 4 years ago
1
Added doctools.py utility script

#47 JoaoRodrigues closed 4 years ago
1
Make web page wider

#46 JoaoRodrigues closed 4 years ago
0
Improves documentation for tools

#45 JoaoRodrigues closed 4 years ago
0
pdb_validate outputs to sys.stdout

#44 joaomcteixeira closed 4 years ago
2
pdb_validate.py output might not be to stderr

#43 brianjimenez closed 4 years ago
5
Update PyPI version

#42 joaomcteixeira closed 4 years ago
8
pdb_selchain is not able to extract a chain with lowercase chain ID when the uppercase is present

#41 DarioMarzella closed 4 years ago
1
Considers isalhum in pdb_selchain

#40 joaomcteixeira closed 4 years ago
4
Doesn't work if a chain ID is lowercase when you remove HETATM

#39 2003100127 closed 4 years ago
8
Bumped status to Stable. Removed RC from version number

#38 JoaoRodrigues closed 5 years ago
0
Extended usage to allow selection of single residues, besides ranges

#37 JoaoRodrigues closed 5 years ago
2
Fixed filtering by occupancy on ANISOU records (issue #35).

#36 JoaoRodrigues closed 5 years ago
1
ANISOU records do not have an occupancy column

#35 pkoukos closed 5 years ago
1
RFE: enhance pdb_selres to allow selection of random residue list

#34 truatpasteurdotfr closed 5 years ago
3
Fixes issue with *.pyc files in Python 2.7

#33 JoaoRodrigues closed 5 years ago
1
Filters out *pyc files generated with python2.7

#32 mtrellet closed 5 years ago
2
Execution of setup.py fails after any execution of "python setup.py test" with python2.7

#31 mtrellet closed 5 years ago
1
Allows for unique residue selection

#30 mtrellet closed 5 years ago
2
Fix URL pointing to PDB format.

#29 JoaoRodrigues closed 5 years ago
1
pdb_selres should allow for selecting a unique residue

#28 mtrellet closed 5 years ago
2
Dead link for RCSB PDB format

#27 mtrellet closed 5 years ago
2
Fix some typos in several scripts usage

#26 mtrellet closed 5 years ago
2
Squared the reported distance for gaps. Fixes #22

#25 JoaoRodrigues closed 5 years ago
1
Add listing/glossary of the tools to our documentation

#24 JoaoRodrigues closed 4 years ago
6
pdb_canonical: converting modified aminoacids to their standard counterparts

#23 JoaoRodrigues closed 4 years ago
6
Distances reported in pdb_gap are squared

#22 JoaoRodrigues closed 5 years ago
0
Added tool to select HETATM records.

#21 JoaoRodrigues closed 5 years ago
8
Added new tool pdb_uniq

#20 JoaoRodrigues closed 4 years ago
8
Ligand selection command

#19 cgott98 closed 5 years ago
7
Correction to comparison function on ANISOU records

#18 JoaoRodrigues closed 5 years ago
1
Added full citation information along with BibTex

#17 JoaoRodrigues closed 5 years ago
2
Added pdb_delinsertions to (selectively) delete insertion codes.

#16 JoaoRodrigues closed 5 years ago
3
What happened to the old `pdb_delocc` tool?

#15 amjjbonvin closed 5 years ago
4

Previous Next