-
Peptides FDRs do not correspond to protein FDRs.
Currently, large-scale studies often have dozens or hundreds of LC-MS runs that are being accumulated. Repeated measurements lead to an accumulation o…
-
Hi,
Is DeepScore compatible with FragPipe as input. Can you also enhance the identification of tryptic peptides using DeepScore. How would this behave for very large datasets.
Best, Peer
-
Many papers on mass-spectrometry based proteomics have shown the use of deep learning for intensity prediction, combining scores across search algorithms, retention time, collision corss section predi…
-
Hi,
In the instructions, it says you can load a .tabular file from PeptideShaker, but I don't see a
way for PeptideShaker to export in the .tabular format. Do you know which export filters
I ne…
-
My CV term validator finds these issues with this file:
ERROR: cvParam distinct peptide-level q-value should have units, but it does not!
WARNING: MS:1001062 should be 'Mascot MGF format' instead of '…
-
Hi,
All the identified peptides with their values are mentioned in result table - identification/peak areas.
Could you tell about the reasoning behind their order ?
It might help immensely to h…
-
```
Eric posted this message to the list. You need to read the attached pdf
containing images for it to make sense
***************************
2) Our next challenge was how to encode the TPP probab…
-
Hi @all: We have put one student analyzing the data to finish the project 🚀. We have made some major advances in the data analysis included in the following PR #55 in the results folder excel and figu…
-
I install MaxcotPercolator following https://www.sanger.ac.uk/science/tools/mascotpercolator. I try to run MascotPercolator on my Linux computer. However, it cannot work well and warn `No modifiaction…
-
### Description of the bug
@WangHong007 @zprobot @daichengxin:
I have been recently testing multiple USIs generated by quantms for DIA experiments. A little background about the problem, USIs a…