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Hello Team,
When I'm trying to place a sequence into the tree on Linux, I got en error `Aborted (core dumped)` without any error information.
And I tried the same data and command on MacOS, core dum…
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Hello!
I am processing ITS data with DADA2 (primers ITS1F-ITS2). I am following recommendations from this paper (https://www.sciencedirect.com/science/article/pii/S1754504818302800?via%3Dihub) and fo…
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Hello,
I tried to redo a tree of life including my own metagenomes (~488) using the approach that you provide in examples (log file:
[phylophlan_tol.log](https://github.com/biobakery/phylophlan/fi…
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It would be nice to have empress automatically label internal with a taxonomy if a user provided a taxonomy .qza file. I thought we had this feature already implemented but after a discussion with Imr…
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Hello,
I'm looking to create a custom database to run in Phylosift and keep getting error messages when trying to build the database using The Monkey. I can index the created database, but the taxa …
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**Describe the bug:**
BUSCO step in eukaryotic binning fails, failing to create database in tmp
**Versions**
e.g.,
```
veba_binning-eukaryotic_2.2.0.sif
```
**Command used to produce erro…
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Hi,
Similar to a recent post, I am trying to do placement for 1.3k sequences msa file builded with mafft. I first build a conda env with raxml & epa-ng.
I then checked my msa file with --parse …
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Hi,
The following job fails:
java -cp scripts/java/PEWO_java/dist/PEWO.jar DistanceGenerator_LITE2 /home/balaban/PEWO/examples/1_fast_test_of_accuracy_procedure/run RAPPAS,EPANG,PPLACER &> /home…
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| TestField | Value |
| ----- | ----- |
| **GUID** | 431467d6-9b4b-48fa-a197-cd5379f5e889 |
| **Label** | AMENDMENT_SCIENTIFICNAMEID_FROM_TAXON |
| **Description** | Proposes an amendment to the v…
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**Describe the problem**:
Issue originally reported on the GBIF feedback portal: https://github.com/gbif/backbone-feedback/issues/263 by @PatrickKennedy2022
Patrick noticed that the following gene…