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http://www.pombase.org/submit-data/phenotype-data-bulk-upload-format
This is quite flexible and could become an official TSV format for PXF (although the json/yaml will still be canonical)
cc @ValWo…
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https://github.com/pombase/website/issues/949
We would like to be able to download tabulated annotation from gene pages.. Because we can.
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We we have an ‘annotation’ in the ‘domain section’ of the gene page which displays the number of transmembrane domains.
This information is from a qualifier in the contig files.
As you can see i…
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Dear all,
The proposal has been made to obsolete to GO:0019551 glutamate catabolic process to 2-oxoglutarate
See:
https://github.com/geneontology/go-ontology/issues/15331
(read from the botto…
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https://www.pombase.org/reference/PMID:15218150
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It would be useful if we could edit terms in activity units. This does not appear to be possible.
In this example we would want to edit the BP to GO:0030466 silent mating-type cassette heterochr…
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We have a couple of disruptions with different names,
Historically we have only allowed a single instance of disruption.
MAybe we should change this to allow for different markers, deleted regions…
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discussion with author:
add
"net-like mitochondrial morphology"
but instead I should rename "branched mitochondria" to "net-like mitochondrial morphology"
See the "branched mitochondria" …
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The comments are the free text annotation from UniProt. So they are really just "unstructured" annotations.
However these annotations are not (currently) attached to entities, so you c…
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Background:
Q from JAcky:
Are all genetic interactions between 2 genes in the Genetic Interaction section of a gene page or just high through put data. Tiffany asked me if she could find out if a …