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| Name | Department/Program | Experties/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Annie Cavalla | Bioinformatics | Cancer genomics, single cell tra…
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Just an issue to collect any relevant papers. For example, there's a whole Genome Biology issue on graph genomes at
https://www.biomedcentral.com/collections/graphgenomes (also see "Pangenome Graph…
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Hello, I tried to use your script to detect the camo regions, but I encountered the following error when I ran 05_CREATE_BED_FILE (extract_camo_regions.py):
```
Wed Jul 26 20:08:19 CST 2023 python…
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The site currently has GNS scans for H12 and IHS, but there were no GNS comparison in the raw XPEHH set. If we want to be able to compare the number of signals per population including Guinea, we shou…
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Hi everyone,
I'm working on a project for my MSc Thesis in Population Genomics to produce RoH and RoHet with R package "detectRUNS".
I used "slidingRUNS.run()" function and it seems work, looking…
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Hi Laura.
I am new to Linux and Python and my below issues could be easy to solve but I try some ways and it did not work.
I have a issue during using "pip3 install -r requirements.txt" (pic1). …
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Dear @hemstrow
I was wondering if it would be easy to write a function to calculate dN/dS ration using snpEff annotated VCF file. Currently, there is no functional tool or package available to do …
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High abundance kmers align to a Haplochromine instance of a [fugu LINE element sequence](http://www.ncbi.nlm.nih.gov/nucleotide/338899919) (GBID [AB601475.1](http://www.ncbi.nlm.nih.gov/pubmed/1002305…
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The paper indicates that the authors do not know of other published graph based aligners. I'm only familiar with two--- GCSA and BWBBLE. Recently another came to my attention, but I've lost the refere…
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Hello!
I'm Luana, a PhD student studying population genomics and species delimitation in plant species (Petunias) with recent, rapid divergence. I was thrilled to discover your new software—it enab…