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With GPML2017 we will define a set of new groupStyles and PV needs to be updated.
- default groupStyle: Group (no visual representation - as "Group" is implemented at the moment)
- Complex (no ch…
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the fact that we have a BLAST service against the gene family consensus sequences is fairly hidden, alphabetized away in a longish dropdown list of species-specific blast dbs; not clear to me if there…
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This issue contains monthly updates to an automatically ranked list of PubMed papers as candidates for curation in the Bioregistry. Papers may be relevant in at least three ways:
(1) as a new prefix…
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https://doi.org/10.1101/235655 (https://www.biorxiv.org/content/early/2017/12/18/235655)
> The functions of proteins and RNAs are determined by a myriad of interactions between their constituent re…
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[LEGUME-670] created by nathanweeks
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### the issue
in my hands, diamond blastx doesn't always return the highest scoring hit with the `-k 1` flag set.
### background
When using DIAMOND for searching illumina read datasets for matc…
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Currently have the % of shared residues and % of shared proteins between CATH superfamilies and Pfam Clans, and CATH superfamilies and Pfam families.
One example of these results is for `http://daw…
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Hi David,
I was recently using OrthoFinder to look for species-specific orthogroups in a new genome that we've assembled. However, I noticed that several of the orthogroups classified as species-sp…
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Hi,
For a large scale protein MSA test, I compiled the 5 largest Pfam families with 1-3 mio sequences and tried to align them with MAGUS.
Unfortunately, MAGUS failed apparently due to a recursion-…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…