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**Youtube**
- [x] [AlphaFold2, OpenFold, Protein Language Models and Beyond | Nazim Bouatta](https://www.youtube.com/watch?v=ON1ltprZKPo) from Molecular Modeling and Drug Discovery (M2D2) 2022
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kntkb updated
7 months ago
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**Summary !!!**
- **BioModel Name**: Jiménez-Luna2021 - Coloring molecules for plasma protein binding prediction
- **BioModel Tag**: Machine learning model, Ersilia
- **Metadata Comments**:
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After migrating from [bio_embeddings](https://github.com/sacdallago/bio_embeddings) to calculate embeddings directly in biotrainer for the provided sequences, it is now theoretically possible to allow…
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Hello.
I want to use EquiPNAS to check my TF bing sites (picked up from RNA seq experiment).
After creating the environment with conda, I downloaded the published models and tested the operation.…
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I have a few questions about DDAffinity.
(1) The outputs in the "case_results.csv" files are confusing for examples "blind testing" (M595), "case study 1" (S285), and "case study 2" (S494). In eac…
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Hello, My config contains the following lines:
```
GENETIC_CODE_TABLE=1
GENETIC_CODE_TABLENAME=Standard
MITO_GENETIC_CODE_TABLE=2
MITO_GENETIC_CODE_TABLENAME=Vertebrate Mitochondrial
PARENT_DI…
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Check following papers:
- [ ] [AlphaFold2 can predict single-mutation effects](https://www.biorxiv.org/content/10.1101/2022.04.14.488301v5)
- [ ] [Using AlphaFold to predict the impact of single m…
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Hi @theGreatHerrLebert , Thansks for your great work! I followed the README documentation but got PSM all scored as 1. So, how do I calculate and get the posterior error, spectrum q, peptide q, protei…
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Heyy,
I've already predicted several protein structures with Alphafold2.0 using a colab-notebook. But I have to predict around 100 protein structures and so I've heard about Omegafold wich can pred…
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Both published yesterday:
Alphafold paper: https://www.nature.com/articles/s41586-021-03819-2
David Baker's paper: https://science.sciencemag.org/content/early/2021/07/14/science.abj8754
I gues…