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Hello,
I am trying to animate a system using ANM in the NMWiz plugin for VMD. I have tried two ways:
1) Create and save an ANM modes file
```
writeNMD('anm_modes.nmd', anm[:5], phage.select('c…
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Drugbank/Drug-Gene-Interaction database
Uniprot - active sites, modified residues, etc
GO-terms
Do we want dynamic or static database interaction?
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The input is the protein UniProt isoform ID. If the pdb-profiling works properly, SIFTS can map and filter the relavant complex PDB structures, and the PISA API can retrieve all protein interface res…
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Reviewer `#7` (Remarks to the Author):
This manuscript provides a pipeline and its software implementation to use Bempp-Exafmm to conduct virus-scale electrostatics simulations. After reading thoug…
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When I try to simulate glycans with Openmm using the script below, I get the error I mentioned at the bottom. Is there a solution for this or is it due to a lack of development in forcefield in the XM…
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Hi!
Currently, it is not possible to use CDK in modular (i.e., Java 9+ style) Java apps. The reason is
- CDK jars don't contain module-info class, therefore when used as dependencies they are treate…
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Sorry if I missed something, but is there a command line tool for updating an existing annotation with promoter sequences? Say I have a Genbank annotation through NCBI's annotation pipeline and I wan…
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From the software call, we've agreed to add some minimal QC to the NEO pipeline for this project.
@pgaudet @vanaukenk Would you mind providing a handful of example genes to check for when building …
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Hi,
may you help me to find a way to work around these possible issues?
1)an issue related to /software/conda-modules/5.3.1/envs/microbeannotator/lib/python3.7/site-packages/Bio/GenBank/Scanner.py",…
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I will write some simple experience here, just to provide a reference. I hope the ash software will become better.