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**Interop Contact**: Jack DiGiovanna
**Active in 2021**: Active,
**Researche**r: Wilson McKerrow [PDC (CRDC), GDC (CRDC), and GTEx (AnVIL) data]
## Analysis Question
The Fenyo lab is studying how re…
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#### Summary:
When running the same stan model in parallel on a high number of datasets on multiple cores, using BiocParallel package with MulticoreParam back-end, I get an error message linked to sh…
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In the following issue #671 we discussed the major changes for SDRF specification during the next release 1.1. One of them, is the extension of SDRF for metabolomics.
> **GOAL**: The aim of adapti…
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Hi,
I have run into the following error using CPTAC. In many ways, I suspect this is my own fault - I am running SLURM jobs on HPC that regularly call cptac functionality, and suspect I ran too man…
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## User story
>As a site administrator
>I want the GigaDB.org homepage list of dataset types to include the same list of dataset types as we have in the [curator admin pages](http://gigadb.org/adm…
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# Abstract
Data Independent Acquisition (DIA) creates a “permanent record of everything” that is ideal for reanalysis, arguably the primary goal of public data repositories.
Within ProteomeXchange…
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We support a Contribution Annotation Framework that allows us to indicate roles of conributors. However, many tutorials still use the "old" style contribution metadata (without roles)
Updating this…
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A general dataset overview that summarizes all datasets at once would be nice.
Maybe a "general" overview at https://pnnl-compbio.github.io/coderdata/datasets/ that then can link to a more detailed d…
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When using the OBI lookup service for terms relevant to targeted/untargeted metabolomics and proteomics assays used in MoTrPAC data, I wasn't able to find the terms for the following:
```
Targeted 3…
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Hi there!!
First of all, thanks for developing an open source tool in R that can handle such complex datasets as those recurrent in proteomics and mass spec.
I am working with the MaxLFQ datase…