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Starting as a placeholder to keep track of version 3 changes. This isn't the ideal location, but at least something we can link issues to in discussions.
List of confirmed changes to make:
- Dro…
grizz updated
7 months ago
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### BioProject Checklist:
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- [x] PRJEB1903
- [x] PRJNA268569
- [x] PRJNA280092
- [x] PRJEB4873
- [x] PRJEB10691
- [x] PRJNA325588
- [x] PRJNA330761
- [x] PRJNA354688
- [x] PRJ…
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It would be really useful if there was field for the protocol.
The reason for that is that the following two urls has the exact same url_norm:
http://test.uk/
https://test.uk/
url_norm is doing t…
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1. [Integrating ChIP-seq with other functional genomics data](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888983/pdf/ely002.pdf)
2. [2014-nature review-Identifying and mitigating bias in next-gener…
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Has anyone been able to use a transformation PMML (normalization to be specific) in pyPMML?
I can get the model to load into python just fine and I can print out the input fields, but if I try to …
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### What happened?
MRIQC fails when uploading IQMs to API.
Error log:
```
/opt/conda/lib/python3.11/site-packages/dipy/denoise/noise_estimate.py:252: RuntimeWarning: divide by zero…
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We need to do a bead size selection clean up to remove primer dimers from our pooled PCR product for ITS2. Details of the amplification and prep for these samples are in my [notebook post](https://ahu…
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If you try to create 2 files of the same type in the same assay in a JSON to Tab conversion only the last file will appear as the name in both columns. For example, if you have a Raw Data File, 'data_…
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### BioProject Checklist:
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- [x] PRJNA550508
- [x] PRJNA529179
- [x] PRJNA528770
- [x] PRJNA524691
- [x] PRJNA521303
- [x] PRJNA516950
- [x] PRJNA508364
- [x] PRJNA488534
- [x…
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### BioProject Checklist:
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- [x] PRJNA549565
- [x] PRJNA357091
- [x] PRJNA507638
- [x] PRJNA505541
- [x] PRJNA480546
- [x] PRJNA480110
- [x] PRJNA419119
- [x] PRJNA374502
- [x…