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Work to be done section:
-Multi-sequence compare tools from the broad institute.
IGV: https://software.broadinstitute.org/software/igv/download
Some good command line softwares you will inevit…
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Love the package, but I have a question.
I have nucleotide reactivities for a given RNA that were generated by hand rather than using shapemap/rnaframework etc etc. It is a just a list of reactivi…
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HI, I would like to ask how do I get groundtruth contact from the PDB file in your provided dataset.
Thanks.
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Hi there! Nice work ;)
Are there any plans to release training code and datasets soon?
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I want to update sphinx-argparse to be able to use `:nodescription:`.
However, when I update the package I get something like this:
![screen shot 2017-09-04 at 3 18 26 pm](https://user-images.g…
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## Expected Behavior
- indexdb command should process RNA sequences and report k-mers of size 15
- a search with a RNA sequence on this database should finish gracefully
## Current Behavior
…
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Hi,
I've got a little issue with `ngl.js`.
Coarse-grainied **DNA** chains (with only `P` and/or `C3'` atoms) work fine, but coarse-grained **RNA** chains (with only `P` and/or `C4'` atoms) are n…
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For instance in PDB 4jjk, for ligand molecule FOL. If I use selection string: `:A and polymer`, the FOL molecule is included in the selection, when it shouldn't because it is not part of the protein c…
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https://sirahff.github.io/documentation/Tutorials%20gromacs.html
2.1. PDB to GROMACS format[](https://sirahff.github.io/documentation/Tutorials%20gromacs.html#id9)
Use pdb2gmx to convert the PDB fi…
xih72 updated
1 month ago
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Sorry for the delays!
[scores.zip](https://github.com/kad-ecoli/rna3db/files/5469708/scores.zip)