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Background
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I am currently using the pre-assembly processing step of the [ATLAS pipeline](https://github.com/metagenome-atlas/atlas) to generate enhanced input sequencing reads for FGS++…
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### Need
As a clinical geneticist I would like to be able to use COSMIC signatures, which can identify signatures of for instance DNA-repair mutations, which would lend confidence to the impact of …
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Here is an outline of a workflow that needs to be enabled in Galaxy to allow variant calling on HIV-1 datasets
- [ ] Upload all datasets for `PRJNA517147`
- [ ] QC with `fastqc` and `multiqc`
…
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Hi there,
we use ICE with docker install. It is very easy and fast to use, thanks!
I am curious what exactly the error was if a sample failed analysis. The log shows:
`-- analyzing 40 filen…
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**User story**
As SSM (Richard R) I would like the new NovaSeqX sequencing machine to have its own 'Inbox' so that the team can track work submitted.
**Who are the primary contacts for this story*…
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Items for review
- Field extentions available for Collection events
- New Split Operation Interface
- Sanger Workflow up to SEQ Batch
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At the moment it is only possible to set a single email address for verification emails of an institute ("sanger_recipient"). In our case SNVs are verified by the sanger facility whereas SVs (only CNV…
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**_Implemented via https://github.com/sanger/General-Backlog-Items/issues/193_**
**User story**
As a Heron or DNAP Limber user, I would like to be able to enter information against custom fields o…
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### Context
The glycoprotein complex (GPC) is the only surface protein of the Lassa virus (LASV) and plays a crucial role in mediating entry into host cells. It is also a primary target for neutr…
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Hi Benoit,
Thanks for Asteroid, looks a very promising tool!
This is not an issue on the program, but more a question.
From what I understand of the paper, Asteroid performs well with high propor…