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fastq_screen does not yield non-zero exit code when aligner returns non-zero exit code.
This seems like a problem since the expected output files are all made, but the reported values will be diffe…
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Hi,
The example code here uses an aligner with the following scoring scheme:
Match:2, Mismatch:-1, all_gaps_penalties=1
```
import ssw_aligner
query='CAGACAATCAGCATGTTTCCGGCAGCGCCGGTAG'
t…
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Hi, I am reaching out to seek clarification regarding an issue I encountered while using the `samtools merge` command in combination with `samtools sort`.
I executed the following command to merge 1…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
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Grab the files in [problem.tar.gz](https://github.com/vgteam/vg/files/10573167/problem.tar.gz) and run `command.sh` which does:
```
vg align -s "$(cat seq.txt)" --pinned --json cutnode.vg
```
…
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Hi @jguhlin,
I am not sure whether this is interesting to others but I want to report here. I was trying to import and compile many Rust software packages to Linux-based android device so that we c…
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leto updated
13 years ago
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Hi,
I wonder if anyone in this community can help me figure out the reason behind the discrepancy in counts. Please see below:
I am using HTSeq-count to generate counts from two different types …
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(enrich2) vikastrivedi@Vikass-MacBook-Pro ~ % enrich_gui
2020-10-30 23:58:19,598 [enrich2.experiment.Experiment - PAL] Found existing HDF5 data store "/Users/vikastrivedi/Downloads/Sad/PAL_exp.h5"
…
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[RNA-Seq read representation of the assembly](https://github.com/trinityrnaseq/trinityrnaseq/wiki/RNA-Seq-Read-Representation-by-Trinity-Assembly)
I am following the steps described in the tutorial…