simon-anders htseq issues

simon-anders / htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

https://htseq.readthedocs.io/en/release_0.11.1/

GNU General Public License v3.0

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issues

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Different counts: Full genome vs split genome

#109 ReemaSingh opened 3 months ago
4
error

#108 selmanurk opened 2 years ago
0
0 gene counts for each region

#107 Valentin-Bio-zz opened 2 years ago
0
HTseq-count --strand parameter for TruSeq RNA Exome

#106 tdfy closed 3 years ago
3
Htseq-count killed

#105 zyh4482 closed 3 years ago
1
stranded information in HTSeq v0.12.4

#104 dhrititandon closed 3 years ago
1
TypeError: unhashable type: 'GenomicFeature'

#103 kpillman closed 4 years ago
2
Issues on htseq/htseq?

#102 ewallace closed 4 years ago
1
building-from-source_wrong-setuptools-called??

#101 brobr closed 4 years ago
4
Nonunique multimap options

#100 ewallace closed 4 years ago
4
Where is Windows installer of HTSeq.

#99 vivekruhela closed 4 years ago
6
Error in documentation describing coordinate conversion for GFF_Reader

#98 marykthompson closed 4 years ago
1
0 BAM alignments processed

#97 kscott94 closed 4 years ago
32
KeyError: 'Non-stranded index used for stranded GenomicArray.'

#96 brobr closed 4 years ago
2
htseq-qa not giving the true aligned reads count

#95 adirot closed 4 years ago
5
Support pickling for SAM_Alignment object

#94 saksham219 closed 4 years ago
1
Cannot install via pip

#93 soerenwolfers closed 4 years ago
2
Cannot install over pip

#92 ValerieMarot closed 4 years ago
7
HTSeq failing to count reads

#91 JCSzamosi closed 4 years ago
1
htseq hates my gtf

#90 ktadler closed 5 years ago
4
Error fetching reads (bam_reader.fetch) with PACbio/minimap2 reads

#89 fgypas closed 4 years ago
3
GenomicInterval.xrange(step = 1) cannot work in python3

#88 chaigsh closed 4 years ago
3
HTSeq-count paired-end reads, mate wrongly assigning in 3'UTR

#87 uguyet closed 4 years ago
1
Typo and pysam link in documentation.

#86 richardkmichael closed 4 years ago
0
HTSeq: 0 GFF lines processed

#85 jasonsaunderswilliams closed 5 years ago
0
Conda install doesn't appear to work

#84 j-berg closed 5 years ago
1
Question about backend of default option -t

#83 gtollefson closed 4 years ago
12
adding a note on Negative Index

#82 shouldsee closed 4 years ago
1
[howTo] Access GenomeArray() using a GenomeInterval() with a negative start

#81 shouldsee closed 4 years ago
10
[feat,GenomicIntervalDeque,CigarOperation]

#80 shouldsee closed 4 years ago
1
[FIX] Python 3.7 StopIteration support

#79 Zethson closed 4 years ago
3
Install Error on MacOS src/StepVector_wrap.cxx:3060:10: fatal error: 'stdexcept' file not found

#78 aleighbrown closed 4 years ago
13
HTSeq==0.6.1p1 Installation broken

#77 Zethson closed 5 years ago
4
definition of 'too_low_aQual' and 'not_aligned' criteria

#76 sandbardev closed 5 years ago
6
HTSeq output files

#75 coolmak32 closed 5 years ago
7
Pysam 0.13.0 required on Mac, but not on Linux

#74 fabio-t closed 5 years ago
1
Htseq count with bed file

#73 MoutonAlice closed 4 years ago
1
Minor issue with position sorted bam missing mate

#72 christiananthon closed 4 years ago
5
-o flag returns error: "too few arguments"

#71 rbenel closed 5 years ago
9
Can't identify proper syntax for multiple additional attributes in htseq-count

#70 croots closed 5 years ago
5
can't figure out why htseq does not run on my gff3

#69 MoutonAlice closed 5 years ago
3
error in ver 0.11 and UMI consideration

#68 Tarela closed 4 years ago
3
unknown type '50', KeyError, raised in libcalignedsegment.pyx:2534

#67 Hongjie-Li closed 4 years ago
7
Homepage URL broken

#66 protist closed 5 years ago
2
Bug in samouts when `-f bam`

#65 adomingues closed 4 years ago
7
Mate not appeared for duplication reads

#64 10-m closed 6 years ago
4
Problem with HTSeq-count with anything other than ENSEMBL

#63 AnnaSOFI closed 4 years ago
2
samout: output bam files

#62 adomingues closed 4 years ago
2
installation issue?

#61 ChVav closed 5 years ago
1
Trouble installing HTSeq (python 3.5) on Mac

#60 Suzanne11 closed 6 years ago
1