GMOD mimosa issues - Githubissues

GMOD / mimosa

Miniature Model Organism Sequence Aligner

http://gmod.github.com/mimosa/

Artistic License 2.0

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

fastacmd not found

#134 leto opened 9 years ago
0
Fixes RT#90677 Moose enum warnings

#133 zoffixznet closed 10 years ago
1
Configurable json api URL

#132 leto opened 12 years ago
0
Example query sequences

#131 leto closed 12 years ago
2
Composite sha1 generation bug

#130 leto closed 12 years ago
2
Failing tests on master

#129 leto closed 12 years ago
2
Don't autodetect *.gff or *.gff3 files

#128 leto closed 12 years ago
1
Attempting to write zero-sized file error leaves job in wrong state

#127 leto opened 12 years ago
0
Mimosa wrongly autodetects indexed sequence files, such as .nsi

#126 leto closed 12 years ago
0
Mimosa runs out of memory trying to read a 756M fasta file

#125 leto closed 12 years ago
1
Remove all uses of File::Slurp

#124 leto closed 12 years ago
1
Alphabet detection

#123 leto opened 12 years ago
3
Autodetecting files only works for *.seq files

#122 leto closed 12 years ago
1
init script for controlling mimosa

#121 leto opened 12 years ago
0
run_mimosa needs a optional port and suffix argument

#120 leto closed 12 years ago
0
tests write temp files in the checkout

#119 rbuels opened 12 years ago
1
Logout button needed

#118 leto opened 12 years ago
0
Downloading fasta from sequence api runs formatdb again

#117 leto opened 12 years ago
0
Out of memory error

#116 leto opened 12 years ago
4
Mimosa sequence set description pages

#115 leto opened 12 years ago
0
JS to verify sequence input is reasonable

#114 leto closed 12 years ago
1
Remove Select All

#113 leto opened 12 years ago
0
Check for a zero-size sqlite db

#112 leto opened 12 years ago
0
Clamp largest value of maxhits to be 1000 by default

#111 leto opened 12 years ago
0
Invoke blastall with -K

#110 leto opened 12 years ago
1
Download all hits as FASTA

#109 leto opened 13 years ago
0
Remember the last sequence set(s) a user aligned against

#108 leto opened 13 years ago
0
Update screenshots and add more

#107 leto opened 13 years ago
0
Multiple datasets

#106 aubombarely closed 13 years ago
1
HTML output for pairwise format: Header report

#105 aubombarely opened 13 years ago
0
HTML output for pairwise format: Empty box

#104 aubombarely opened 13 years ago
0
Tabulated values for "advanced options"

#103 aubombarely closed 13 years ago
0
Tab format HTML output, query id clickable error

#102 aubombarely closed 13 years ago
2
No HTML output for some Alignment View

#101 aubombarely closed 13 years ago
0
Cached work for no sequence error

#100 aubombarely closed 13 years ago
1
Error when no sequence is used

#99 aubombarely opened 13 years ago
0
Grid fields

#98 aubombarely opened 13 years ago
0
Instructions for adding datasets

#97 leto opened 13 years ago
0
Report formatting

#96 leto opened 13 years ago
0
Autocrud needs to check if user has admin rights

#95 leto opened 13 years ago
0
Only index once, and only when necessary

#94 leto opened 13 years ago
0
Waiting screen

#93 leto closed 13 years ago
1
If-modified-since headers

#92 leto opened 13 years ago
0
Ability to download seqs when aligning against multiple mimosa sequence sets

#91 leto closed 13 years ago
1
Error pages should still have tabs

#90 leto opened 13 years ago
0
Button to clear the sequence input textarea

#89 leto opened 13 years ago
0
Submitting an invalid query a second time says the "job is still running"

#88 leto closed 13 years ago
0
Provide way to customize links to sequences in HTML blast reports

#87 leto closed 13 years ago
1
Javascript errors on report page when mousing over images

#86 leto closed 13 years ago
2
Bookmarkable html reports

#85 leto closed 13 years ago
1