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GMOD
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mimosa
Miniature Model Organism Sequence Aligner
http://gmod.github.com/mimosa/
Artistic License 2.0
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Full paths for sequence_data_dir don't work
#84
leto
closed
12 years ago
0
Javascript tests
#83
leto
opened
13 years ago
0
Bulk loading of sequence sets
#82
leto
opened
13 years ago
1
admin and preferences tab html shown at page load
#81
rbuels
closed
13 years ago
0
invalid html
#80
rbuels
closed
13 years ago
1
formatted databases need titles
#79
rbuels
opened
13 years ago
2
Sequence sets should filter the program list, not the other way around
#78
rbuels
opened
13 years ago
3
Mimosa should only re-index databases if needed
#77
leto
closed
13 years ago
0
Grid should show all sequence sets, even those not connected to an organism
#76
leto
closed
13 years ago
0
Support for BWA
#75
leto
opened
13 years ago
0
Cached sequences directory
#74
leto
closed
13 years ago
1
Autodetect sequence files, because 'loading scripts' are dumb
#73
leto
closed
13 years ago
1
runtime limit for blocking jobs
#72
rbuels
closed
13 years ago
0
Config key to disable "select all"
#71
leto
opened
13 years ago
0
Control size of cached composite blast databases
#70
leto
opened
13 years ago
0
"Select all" button for sequence sets
#69
leto
opened
13 years ago
0
Support invoking qsub
#68
leto
opened
13 years ago
0
Default sequence set
#67
leto
closed
13 years ago
0
Document all config keys
#66
leto
closed
13 years ago
0
Verify that input sequence is in the correct alphabet
#65
leto
closed
13 years ago
1
Odd error when submitting
#64
leto
closed
13 years ago
2
Grid div changes height when filtered
#63
leto
closed
13 years ago
0
Some tests fail if temp dir is not cleaned
#62
leto
opened
13 years ago
0
Refactor /submit to multiple functions
#61
leto
opened
13 years ago
0
Cache reports on disk
#60
leto
closed
13 years ago
0
Job already submitted page should just redirect to report
#59
leto
closed
13 years ago
0
Javascript errors on report page
#58
leto
closed
13 years ago
1
Config key to specify tmp dir
#57
leto
closed
13 years ago
0
Submitting a job hangs
#56
leto
closed
13 years ago
2
Jobs need to be marked as complete
#55
leto
closed
13 years ago
0
A test that actually has a BLAST hit
#54
leto
closed
13 years ago
0
Configurable maximum size of reports to generates graphs for
#53
leto
opened
13 years ago
0
Config key to disable qsub
#52
leto
closed
13 years ago
0
Config key to allow anonymous submissions
#51
leto
closed
13 years ago
0
Detect qsub
#50
leto
opened
13 years ago
0
Show friendly message when there are no hits
#49
leto
closed
13 years ago
0
When showing error about sequence input being too short, mention the min sequence size
#48
leto
closed
13 years ago
0
Need mimosa_sequence_set_organism test data
#47
leto
closed
13 years ago
0
Unique Job id's to prevent re-submissions
#46
leto
closed
13 years ago
1
Blast database type autoguessing doesn't work
#45
leto
closed
13 years ago
1
Bio::BLAST::Database needs an exception object
#44
leto
closed
13 years ago
1
Column headers and row cells don't line up
#43
leto
closed
13 years ago
1
Test suite bug stomps on mimosa_test.db
#42
leto
closed
13 years ago
1
Identifier plugins
#41
leto
opened
13 years ago
1
Render sequence set details in a "more details popup"
#40
leto
opened
13 years ago
0
Tooltip for valid sequence input
#39
leto
opened
13 years ago
0
Specify a global (for all users) default selected sequence set
#38
leto
closed
13 years ago
1
Support selecting multiple sequence sets to blast against
#37
leto
closed
13 years ago
6
Bio::BLAST::Database needs to be used to make t/integration/blast.t work
#36
leto
closed
13 years ago
2
Sequence set is hardcoded to s. peruvianum
#35
leto
closed
13 years ago
1
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