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Hello, I have a couple of questions:
1. Am I able to use slamdunk with small RNA library? I am trying to see nascent small RNAs using 4SU labelling.
2. I am having difficulty with the usage and non …
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### Description of the bug
recently I tried to help a user to run the nf-core/circRNA pipeline, but met tons of errors. And this is one of the latest after I downloaded the reference genome from aw…
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### Description of the bug
Hello!
I am trying to solve the following error, but I am not able to use the parameter `--limitSjdbInsertNsj` to resolve it.
Thank you very much for your time and …
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### Description of the bug
I cannot run nf-core/circRNA. The code works on other computers and in a cluster.
### Command used and terminal output
```console
nextflow run nf-core/circRNA
…
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Hello again,
I wanted to ask a clarifying question about trimming multiple adapters from paired end reads. I detected Nextera and small RNA 3' adapter. I then trimmed these by running trimgalore tw…
mjbug updated
5 months ago
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I was running a smallRNA analysis on bcbio, and was expecting the output to be like previous analyses I have carried out, where each isomir is specified according to your naming convention. However, t…
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### Description of the bug
CIRIquant step can't find BWA index files.
This behaviour is seen regardless if reference files are fetched from AWS or locally assigned.
### Command used and terminal o…
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Hi Felix,
I was trying to run TrimGalore on some Illumina data on the cluster. I am getting this error when I run this command through a sbatch script.
### **COMMAND:**
`trim_galore --paired --gz…
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Hello!
Even though I am halted on the heatmap function still, I had the normalization files "list_norm_dgls" and I was able to make a "piRNA_predicted_Targets_rheMac10.txt". I'm partial to the voom…
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https://mp.weixin.qq.com/s/uVMKL1Us4YWDVen2JB4kGQ
ixxmu updated
5 months ago