lpantano seqcluster issues

lpantano / seqcluster

small RNA analysis from NGS data

http://seqcluster.readthedocs.io

MIT License

35 stars 16 forks source link

issues

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MIRALIGNER/question

#58 Alarabi1980 closed 4 months ago
6
Devel

#57 lpantano opened 6 months ago
0
An error occurred when running the program

#56 charles-xue opened 8 months ago
4
update main with umi error fix

#55 lpantano closed 2 years ago
0
fix umi bug

#54 abartlett004 closed 2 years ago
0
Unable to find documentation

#53 SarahLuca closed 4 months ago
4
fix bug in report making profile with long tail

#52 lpantano closed 3 years ago
0
possible error with pandas 1.1

#51 lpantano opened 3 years ago
0
Bioconda -> Github is wrong link

#50 harish0201 opened 3 years ago
0
Questions about using the seqcluster json output for some pipeline analysis

#49 BioinfoHub-PeiQinNg closed 4 months ago
3
can python dateutils dependency go?

#48 smoe closed 4 years ago
3
TypeError: 'map' object is not subscriptable

#47 lurebgi closed 4 years ago
8
More detail in log for make_profile

#46 smoe closed 5 years ago
5
nosetests is not in source tree

#45 smoe closed 5 years ago
0
Don't demand local amcharts js library

#44 smoe closed 5 years ago
0
amchart - redistributable in source tree?

#43 smoe closed 5 years ago
3
Series of beautifications, typos

#42 smoe closed 5 years ago
1
Devel

#41 lpantano closed 5 years ago
0
proressbar new api; lazy output decoding

#40 kkarolis closed 5 years ago
2
issue in seqcluster prepare

#39 kisun closed 5 years ago
11
Python 3 support: progressbar2 and list/iterator fixes

#38 chapmanb closed 5 years ago
3
Python 3 support: use general fixes and six for 2 and 3 support

#37 chapmanb closed 5 years ago
1
No UMI transform specified, assuming pre-transformed data.

#36 jxshi closed 5 years ago
5
seqcluster executable not found when testing

#35 smoe closed 5 years ago
1
Helping transition to Python3

#34 smoe closed 5 years ago
5
Please clean-up or git-ignore data/examples/miraligner/sim_isomir_unique.fa

#33 smoe closed 4 months ago
2
python setup.py test - __init__.py argument missing

#32 smoe closed 5 years ago
4
Explicit paths for modules

#31 smoe closed 6 years ago
4
First round of Python3 compatibility

#30 smoe closed 6 years ago
4
running from bcbio pipeline

#29 ahsen1402 closed 4 months ago
7
Unfamiliar output from bcbio

#28 gnvalbuena closed 4 months ago
3
miRNA annotation with seqcluster from BAM file

#27 svm-zhang closed 6 years ago
12
error install

#26 wengqi123 closed 4 months ago
8
new alignment tool for srna

#25 lpantano closed 4 months ago
0
issue in seqcluster collapser

#24 YangZituo closed 7 years ago
2
Issue with IsomirDataSeqFromFiles

#23 biowizz closed 7 years ago
4
Permission denied during collapse step

#22 AlexandraBomane closed 4 months ago
5
Contribution by class

#21 ramaniak closed 7 years ago
30
problem with "seqcluster report" command

#20 AlexandraBomane closed 7 years ago
2
problem with "Prepare samples" step

#19 AlexandraBomane closed 7 years ago
32
miraligner Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1

#18 hmkim closed 8 years ago
7
Regarding of fastq quality by collapse

#17 hmkim closed 6 years ago
2
report problem

#16 lpantano closed 4 months ago
30
metadata_fn in report picks up operating system artifacts

#15 ro6ert closed 8 years ago
1
IsomirDataSeqFromFiles error

#14 hmkim closed 8 years ago
1
Collapse

#13 filicado closed 8 years ago
2
Support for mouse genome

#12 a113n closed 8 years ago
17
NameError: global name 'gzip' is not defined

#11 sung closed 8 years ago
3
Add a Bitdeli Badge to README

#10 bitdeli-chef closed 9 years ago
0
Add a Gitter chat badge to README.rst

#9 gitter-badger opened 9 years ago
2