-
We want to make sure the example notebooks in this repo: https://github.com/microbiomedata/notebook_hackathons do not break with any changes or pushes to the NMDC-runtime API.
The following endpoi…
kheal updated
1 month ago
-
MacQIIME Todds-Mac-Pro:qiime_to_lefse-master $ python qiime_to_lefse.py -m map_soil_final3.txt -t soil_phyloseq_json_L6.txt -c Description -o converted_2lefse.txt --clean
Traceback (most recent call…
-
The IG should come up with definitions for environmental sample, environmental DNA (in comparison to single species samples), abiotic versus biotic environments etc.
**_Examples from Droege et al. …
-
## Land model project
* Global Rh sites distribution
![image](https://user-images.githubusercontent.com/13302161/79457104-a4e15a00-7fbd-11ea-8572-bfcf6f17e2fa.png)
* Rh and Ra temporal coverage in …
-
The machine learning classifiers used for taxonomic assignment usually assume that all taxonomies are equally likely (eg. Wang, 2007). That assumption can be relaxed for `q2-feature-classifier`.
To…
-
Hi there! I'm trying to use sourcetracker2 for the first time and I have some doubts about how to start.
What I have is a fastq file generated from a metagenomic sequencing.
What I want to do is to …
-
**Thematic analytics**
As discussed with @tobiasgf @thomasstjerne , it would be nice to have regular analytics, similar to country reports, for the key thematic segments in GBIF, especially DNA, so…
-
Add a new entry point to `farm_fd2` for Soil Amendments
- This entry point will appear on the "Soil" submenu on the FarmData2 menu.
- This entry point should:
- be created using `addEntrypoint.…
-
Hi,
I used dada2 for analyzing the 16S dataset and now I am trying to predict high-level phenotypes in the data using Bugbase. But while outputting the biom file I am facing some problems. I am not s…
-
Hi Joey,
Firstly, fantastic job on phyloseq.
In the documentation for tip_glom it states future releases would have extended clustering capabilities for hcfun.
I find tip_glom to be very usef…
ch16S updated
5 years ago