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Hi Marcel,
Thank you for the package! There has been a long-lasting issue with reading in Visium /outs, where there are non-unique gene names. There are 18085 genes, but 18082 unique gene names. So…
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I saw your paper on bioRxiv. Just wondering, what if you use a hexagonal grid rather than a square grid? How would it affect the SVG results?
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老师您好，我这里在复现论文的时候，能够利用说明书上的数据完成SV基因的识别，但是CTSV函数使用的CTSVexample_data中的spe这个列表我不太清楚要如何构造，用于其他数据的应用
 :installation of package ‘magick’ had non-zero exit status`
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I was working with some SPE objects and noticed `cbind` has some unexpected behavior when subsetting spots from samples.
Specifically, I have started with a SPE containing multiple samples and with…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/SydneyBioX/wSIR
Confirm the following by editing …
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Is there scope to define a splitColData and splitRowData methods for the SingleCellExperiment class?
I am working with a rather large SingleCellExperiment object and I often find myself needing to …
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Link to Chapter: https://lmweber.org/OSTA-book/quality-control.html
Suggestions:
1. Emphasize the column `cell_count` in the `SpatialExperiment` is a product of `VistoSeg` instead of `spaceranger…
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Hello,
I am testing `SpotClean` on a few 10X Visium datasets and am running into an error on some. I have not tried debugging too extensively as I'm hoping to get more information from the communit…