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E.g. if the label is 'Rana sp. nov. G12345', look up G12345 in our genbank table to get appropriate SILVA or NCBI taxon, and suggest that taxon. (which we hope is not 'Rana sp. nov.')
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If a species name cannot be matched, the TNRS may still return a partial match on the genus. For some users this is a useful feature. However, because partial matches will generally have low overall m…
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Notes from Yan sent by e-mail saved here...
The images thing is interesting, actually. There are a number of organisations which might like to have a OneZoom tree with only their images on it. I im…
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Hi,
I am actually comparing the Open Tree of Life IDs retrieved via GNVerify and via rotl (official Open Tree of Life API).
They give almost identical results (which is good!) but sadly in some ca…
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For example in commit,
https://github.com/OpenTreeOfLife/phylesystem-1/commit/dfd9503d8706c33d814d253f0f455ef9c798b466
I modified 'Eriocran' to 'Eriocrania subpurpurella' then when I clicked the map,…
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This is just a request for design review regarding HTTP status codes returned by the services when the wrapped service yields a code other than 200, as discussed on today's call.
Currently if a wra…
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Before submitting coordinates, users should be able to adjust parameters maxdist and maxdistrel. The two parameters adjust the thresholds required for a point to be flagged as a possible centroid. "ma…
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Here is the state of OTT matching with the current extinct tree:
> Over all input files, 73.849% names were precisely matched, 4.358% matched via synonyms, and 21.792% have no match
And note tha…
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I was trying to get taxonomic information about a large number (>3,000) of species across the entire phylogeny, and I noticed that no matter which species I entered into `BIEN_taxonomy_species()`, the…
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I obtained ott ids from the tip labels of a set of trees downloaded with `rotl::get_study_tree` using the option `tip_label = "ott_id"`
When running:
```
tree