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This is a very nice package for spatial transcriptome, hoping the tutorial of SPATA can be completed for more people to use.
In your preprint paper you mentioned the possibility to implement each vec…
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scv.pl.scatter cannot generate plot to show transcriptional switches.
I convert seurat object to anndata, and then perform rna velocity (dynamical model) through scVelo. I can generate the heatmap …
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Aim: improve the maintainability of the project catalogue, allowing it to grow without causing an increasing amount of development overhead. Currently, it is populated via a manually run script that c…
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As one can see for the following Item, Senior Theses Items imported from submissions for certificate programs are members of multiple collections, one being the departmental collection, the other bein…
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Thanks for the very helpful package.
I am confused at the part of the pseudotime analysis in the tutorial of DG.
What do the root cells and end cells mean exactly? And how to to deal with branch…
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Most likely tied to #27.
Origin originally posted from Hannes: `sequencing_protocol.paired_end`
In the browser, `protocols` was seen to be empty (`[]`).
Project UUID: `0e677984-3879-562d-9c6a…
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Origin originally posted from Hannes: `specimen_from_organism.diseases[0].text`
In the browser, the request response was seen to have `diseases` in both `donor` and `specimen from organism`.
Pro…
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Most likely tied to #25.
Origin originally posted from Hannes: `library_preparation_protocol.library_construction_method.text`
In the browser, `protocols` was seen to be empty (`[]`).
Project…
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Origin originally posted from Hannes: `specimen_from_organism.organ.text`
In the browser, the request response was seen to have:
`Organ` is contained in specimens and not in samples (`[]`).
Pro…