DailyDreaming load-project issues

DailyDreaming / load-project

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Bump requests from 2.22.0 to 2.31.0

#150 dependabot[bot] opened 1 year ago
0
Generate metadata for SCXA projects

#149 jessebrennan closed 4 years ago
0
Extend cell_count.py to count genes and compare diff counting method results (#144)

#148 dsotirho-ucsc closed 4 years ago
1
Add SCXA projects

#147 jessebrennan closed 4 years ago
1
fix expected row lengths

#146 nadove-ucsc closed 4 years ago
2
Row length assertions fire

#145 hannes-ucsc closed 4 years ago
0
Extend cell_count.py to count genes and compare diff counting method results

#144 dsotirho-ucsc closed 4 years ago
0
Issues/noah aviel dove/fix more headers

#143 nadove-ucsc closed 4 years ago
1
Missing header line in some barcodes.tsv.gz and genes.tsv.gz files

#142 dsotirho-ucsc closed 4 years ago
3
Standardize width of QC plots to 600 pixels

#141 theathorn closed 4 years ago
1
Add conversion of SCXA matrices

#140 hannes-ucsc closed 4 years ago
0
Populated Paired Ends Value/Column

#139 GPelayo closed 4 years ago
0
Issues/noah aviel dove/135 integrate tsne

#138 nadove-ucsc closed 4 years ago
0
Issues/noah aviel dove/123 cellfiles path

#137 nadove-ucsc closed 4 years ago
2
Replace latin-1 characters so that gene names are consistent

#136 achave11-ucsc closed 4 years ago
2
Move tsne script into load-project repo.

#135 theathorn closed 4 years ago
1
fix broken target uuids

#134 nadove-ucsc closed 4 years ago
0
get_target_project_dirs does not work with UUIDS

#133 nadove-ucsc closed 4 years ago
1
Missing file extensions in h5 conversion output

#132 nadove-ucsc closed 4 years ago
1
atomic_gzip_file truncates file contents

#131 nadove-ucsc closed 4 years ago
1
Trim whitespace from csv value when creating mtx (#129)

#130 dsotirho-ucsc closed 4 years ago
0
Trim whitespace from csv value when creating mtx

#129 dsotirho-ucsc closed 4 years ago
0
Add 'featurename' column to h5 to matrix transformer a.k.a gene names

#128 achave11-ucsc closed 4 years ago
1
Store cell count in a per project stats file (#122)

#127 dsotirho-ucsc closed 4 years ago
0
filter header row from cell file

#126 nadove-ucsc closed 4 years ago
0
First argument to IndividualCellFiles constructor should be as specific as possible

#125 hannes-ucsc closed 4 years ago
2
Add static matrices and metadata to `make report` (#120)

#124 dsotirho-ucsc closed 4 years ago
0
Path to converted per-cell matrices should reflect complete path relative to `geo` dir

#123 hannes-ucsc closed 4 years ago
7
Eliminate `cell_counts.json`

#122 hannes-ucsc closed 4 years ago
0
Decide what to do with the GEO projects that have an HCA matrix

#121 hannes-ucsc opened 4 years ago
1
Add support for static matrices and metadata to `make report`

#120 hannes-ucsc closed 4 years ago
0
`make matrices` fails for GSE113197

#119 hannes-ucsc closed 4 years ago
1
Missing metadata for certain GEO projects

#118 hannes-ucsc opened 4 years ago
0
Cite tsne plot sources.

#117 DailyDreaming closed 4 years ago
1
Log mtx inconsistencies in count_cells.py (#108)

#116 dsotirho-ucsc closed 4 years ago
0
Issues/noah aviel dove/43 cat cell files

#115 nadove-ucsc closed 4 years ago
0
Handle latin1 Excel quotes in GSE127969_counts_TPM_ALL.csv.gz

#114 theathorn closed 4 years ago
1
Reconcile differences between methods to generate cell counts

#113 theathorn opened 4 years ago
3
Add gene names to matrices converted from CSV

#112 theathorn opened 4 years ago
0
Import SCXA projects

#111 hannes-ucsc closed 4 years ago
1
Add some previously skipped projects

#110 jessebrennan closed 4 years ago
1
Replace 'path.as_posix()' usage with 'str(path)'

#109 achave11-ucsc closed 4 years ago
0
Log mtx inconsistencies in count_cells.py

#108 hannes-ucsc closed 4 years ago
0
Create QC plots for matrices added this week

#107 hannes-ucsc opened 4 years ago
2
Improve idempotency for matrix zip generation

#106 jessebrennan opened 4 years ago
0
Add gene names to matrices converted from H5

#105 hannes-ucsc closed 4 years ago
1
Parallelize MTX generation (#86)

#104 dsotirho-ucsc closed 4 years ago
2
Create individual users on the instance

#103 hannes-ucsc closed 4 years ago
0
Use globs to compact the explicit lists of paths in convert_matrices

#102 hannes-ucsc opened 4 years ago
0
Replace uses of `path.as_posix()` with `str(path)`

#101 hannes-ucsc closed 4 years ago
0