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python ~/biosoft/genome-feature/TE_Density/examples/general_read_density_data.py /home/zhangwenda/biosoft/genome-feature/TE_Data/filtered_input_data/Cleaned_geta.tsv filtered_input_data/revised_inpu…
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Hi,
I have a few questions about the annotations provided by TEsmall.
The reads that are annotated as tRNA, are they tRFs? Or are they part of tRNA anticodons or both?
The reads that are annotated…
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I am encountering an error that I am not sure how to fix. Below the output I got;
```
someone@somemachine:~/Biotools/TnSeq-pipe$ source/run_tnseq_mapping.sh --ref ASM9156v1
Output directory: data/…
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Dear all,
The proposal has been made to obsolete GO:0070893 transposon integration & regulation children
see https://github.com/geneontology/go-ontology/issues/24560
Experimental annotations…
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Hi,
I would like to use your tool, unfortunately I have some problems.
When I run the program on test data, I see the following problems:
```
/mnt/655a20f4-6ab2-4a63-84cc-be645d22970d/temp22/T…
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Hi
I'm using a diploid organism for genome assembly and when used the Genomescope tool on Galaxy to evaluate the hifi reads, it created an odd plot than the expected two peak plot. I used FCS-GX an…
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貼吧活動：(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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I installed `McClintock` and all dependencies in a conda environment (on the cloud; databricks) and tried the pipeline with the test dataset acquired from `download_test_data.py`. I got the following…
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Discussing with @hattrill
- [x] GO:0034587 piRNA metabolic process and GO:1990511 piRNA biosynthetic process seem to have been used interchangeably to mean 'piRNA processing' - we need to review …
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Actually is implemented, but the trimmed reads are not used as input
to `bacteria_tradis`. The reason is that the suggested `trimmomatic`
parameters (`ILLUMINACLIP:TruSeq3-SE:2:30:1`) do not ensure th…