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Hello!
I am attempting to upload a GFF file on Tripal 7.x-2.x (https://github.com/tripal/tripal.git). However, the job keeps stalling at around 37% of parsed lines.
There is no error output from…
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## executive summary of solution
```
git clone https://gist.github.com/0dddfd015ff6ef1f545364c2ceff1f0b.git
drush scr 0dddfd015ff6ef1f545364c2ceff1f0b/Migrate_node_fields.php
rm -rf 0dddfd015ff6ef…
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In our current organism page setup, we automagically link to the species' flatfile directory on our server, so the user easily find where the files from an organism are. See the 'data files' section o…
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In our Tripal3 organism setup, taxid is required. I'm guessing this is because we are using the chado organism input page as the place for new users to submit organism information, and we've been requ…
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This is a starting issue to generate a 'Jbrowse' field for Tripal3 gene pages. Ideally this would be generalizable for any Tripal site (that also sets up Jbrowse), and either be pulled into Tripal cor…
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- [x] Trait pages where there a multiple methods/units used for a single project: show all methods/units in stacked charts for comparison. This should only be within a single experiment.
- [x] Downlo…
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These modules configure the bundles for organism, feature, and analysis to look as intended.
NOTE:
These modules result in some unforseen consequences. HQ has trouble with them. Field group na…
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## BUG/ERROR report
### System information
* Tripal Version: v3
* Drupal Version: 7.69
* PostgreSQL Version: PostgreSQL 13.0 (Ubuntu 13.0-1.pgdg18.04+1)
* PHP Version: 7.3.23-1+ubuntu18…
Xaiku updated
3 years ago
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Setting a custom machine name for Tripal Content Types that does not abide by the `bio_data_n` convention seems to be causing some issues.
For example, I had two Tripal content types on my dev site…
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Hello,
I'm looking at the code for the expression file loader. The user can use two regex, one for the start of the data, and one for the end.
Looking at the loop, it feels like the ending rege…