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### Description of feature
Retrieve transcription start sites for genes for use with ATAC data.
This could be similar to the `GenomicFeatures::promoters` function (description available [in this v…
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Checking IPSW for required components...All required components found in IPSWExtracting filesystem from IPSW: myrootfs.dmge----E-2-------------------e=-2] 100.0%Getting ApNonce in dfu mode...38 d5 85 …
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The shell script recipe for extracting TSS information from a refgene_anno file can miss transcript start sites when two genes share a transcript start.
This problem affected literally 1000s of g…
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We need to upgrade `btcsuite` in the node and in `go-tss` to enable Taproot scripts. Currently, we have several different `btcd` package versions, which creates a headache in BTC dependencies in the p…
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Hi,
Thanks for this fantastic resource!
When I use the GRCh38-ccREs.bed download from SCREEN,there are some dELS,CTCF-bound and dELS to their near protein coding gene TSS are less than 2kb.
GE…
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Many EAs are vague (most of the EAs for the new SFRs). This generally leads to large inconsistencies between different labs.
For example:
- FDP_CSI_EXT.1 TSS says, “verify that the description of …
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Run `zetae2e setup-bitcoin cmd/zetae2e/config/local.yml`
And Show logs `⚙️ setting up TSS address`
It's been more than half an hour, and it's not completed
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Hi,
I'm trying to export the counts to a table to works around #193 but
```
tss_export(exp,
samples = "all",
file_type = "table",
out_dir = testing_out,
…
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I got the data from Inne and need to examine and put her data into current HDMA-lake river network (`/glade/campaign/cgd/tss/people/mizukami/mizuRoute_data/cesm_mizuRoute/ancillary_data/Network_topolo…
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Rules found in #31 need to be turned into code and the code needs to be written back into the scoring table