-
```
URL of the application, including the query parameters that specify the
filter:http://explorer.cancerregulome.org/all_pairs/?dataset=kirc_01oct12_A_pw&t
_label=aldh4a1
Using KIRC data set with tu…
-
Hi,
In the paper (SpatialDWLS: accurate deconvolution of spatial transcriptomic data), in figure 2C there was a bar plot of the different composition of deconvoluted cell types generated - this gr…
-
Hi @faridrashidi,
I am sorry for the late reply.
I have added functions for finding normal and tumor cells in XClone BAF module (latest version via github installation).
And [XClone…
-
Hello.
I have encountered an issue with Kassandra while using it on a webpage. We have generated input for Kassandra with Kallisto and used the webpage to upload data. However, only TUMOR model seem…
-
Hello,
I am trying to run differential expression between Tumor and Tcells LR pairs but am getting
`Error: order should contain names of all sectors`
![Screen Shot 2020-05-06 at 5 36 46 PM](ht…
-
```
URL of the application, including the query parameters that specify the
filter:http://explorer.cancerregulome.org/all_pairs/?dataset=kirc_01oct12_A_pw&t
_label=aldh4a1
Using KIRC data set with tu…
-
Wizard (or cards) appears after the user clicks the Get Started button:
- [ ] Add three, stubbed out, simple, initial cards -- one for genes, one for enrichment, one for network
-
There are a handful of labelled fields, but some additional labels would be helpful.
For example, in the subjects table:
1. `subject_id`: universal subject identifier (UUID), unique within the d…
-
### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/635#discussioncomment-10140478
### Describe the goals of this ana…
-
library(SummarizedExperiment)
library(TCGAbiolinks)
library(dplyr)
query.exp