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**Command run:**
```nextflow run -params-file params.yml -c custom.config -profile uppmax /proj/rosling_storage/AMF/b2017181_nobackup/merce/try_RepeatDefeaters/RepeatDefeaters_ccandik```
I tried t…
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## Problem description
`gt readjoiner prefilter` skips a sequence with a N.
## Exact command line call triggering the problem
```
gt readjoiner prefilter -des -readset input_file.set -db input_file.…
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list of copy-paste commands for Win/Mac in ThinLinc + [screenshot of copy-paste area](https://uppmax.github.io/bianca_workshop/img/copy_paste.PNG)
Place: Introduction
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Hello Piper Developers,
I have noticed piper for a while but I did not pay enough attention to it. Now, my familarity with Queue/GATK framework, and a pressure to increase analysis throughput, I decid…
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Hi,
First Thanks you very much for PrefKit!
I am having some problem on my multi-region based cloud setup. NOVA client works fine with multiple regions:
--------- salman -----------
export OS_USE…
stoor updated
8 years ago
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`https://www.uppmax.uu.se/support/faq/projects-and-accounts-faq/what-should-i-think-about-when-planning-a-course-using-uppmax-resources/` is a broken link.
As far as I can see, one needs to:
- […
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### The problem
The InfoGlue link is broken.
Consider merging the InfoGlue wisdom to here (if not already done so).
### InfoGlue link
https://www.uppmax.uu.se/resources/systems/storage-system…
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Currently, there is a link to a shared document at https://uppmax.github.io/bianca_workshop/intermediate/intro/ pointing to [https://hackmd.io/@bclaremar/bianca_hack_dec_2023?both](https://hackmd.io/@…
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Currently [https://uppmax.github.io/bianca_workshop/intermediate/intro/](https://uppmax.github.io/bianca_workshop/intermediate/intro/) contains the schedule of the previous iteration of the course and…