NBISweden wgs-structvar issues

NBISweden / wgs-structvar

Whole Genome Sequenceing Structural Variation Pipelines

GNU General Public License v3.0

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issues

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[Running problem]Unknown config attribute `params.False`

#101 hanxuelian opened 3 years ago
1
Update README.md to include other sv workflows.

#100 viklund closed 5 years ago
0
Release bump

#99 viklund closed 7 years ago
0
Create LICENSE

#98 viklund closed 7 years ago
0
Develop

#97 viklund closed 7 years ago
0
Make it possible to turn off genomic_region_filtering

#96 viklund opened 7 years ago
0
Rename filterings to

#95 viklund opened 7 years ago
0
Runfile ignore errors

#94 glormph closed 7 years ago
0
Mask swegen feature

#93 glormph closed 7 years ago
0
Mask with swegen dataset

#92 viklund opened 7 years ago
0
Smarter error handling especially for multiple runs

#91 viklund opened 7 years ago
3
Fastq and bamindex creation to workdir if necessary

#90 glormph closed 7 years ago
0
Feature/include configs

#89 viklund closed 7 years ago
0
Revert "simplified git_grab_revision function"

#88 viklund closed 7 years ago
0
get rid of .close()

#87 maxulysse closed 7 years ago
0
simplified git_grab_revision function

#86 maxulysse closed 7 years ago
0
snpEff got an error when running on a complete bamfile.

#85 viklund opened 7 years ago
0
Added support link to new issue in README.md

#84 viklund closed 7 years ago
1
FastQ creation checks

#83 viklund opened 7 years ago
0
FastQ and bam index files are created next to original bam file

#82 viklund opened 7 years ago
1
Version 1.1

#81 viklund opened 7 years ago
0
Support handling

#80 viklund opened 7 years ago
0
Forgot a $

#79 viklund closed 7 years ago
1
Support includeConfig to mix configs from files.

#78 glormph opened 7 years ago
0
Merge develop to create release 1.0

#77 glormph closed 7 years ago
1
Remove if exist clauses

#76 glormph closed 7 years ago
0
Param input check

#75 glormph closed 7 years ago
0
Param input check

#74 glormph closed 7 years ago
0
Test runs before release 1.0

#73 glormph closed 7 years ago
0
Release1.0 prep

#72 glormph closed 7 years ago
0
Vep memory fix

#71 viklund closed 7 years ago
0
Slurm book cores

#70 glormph closed 7 years ago
0
Release1.0 prep -- first round

#69 glormph closed 7 years ago
0
Release 1.0

#68 viklund opened 7 years ago
0
The help message should be clear

#67 viklund closed 7 years ago
2
Readme.md should contain all information needed for running the workflow

#66 viklund closed 7 years ago
1
Should be runnable out of the box on uppmax

#65 viklund closed 7 years ago
0
This is just a test

#64 viklund closed 7 years ago
0
Slurm memory overflow on variant effect prediction

#63 dnil closed 7 years ago
2
Use current versions of samtools and manta

#62 marcelm closed 7 years ago
0
Fix: masks/ dir is relative to main script dir

#61 marcelm closed 7 years ago
0
Add a "local" profile for running locally

#60 marcelm closed 7 years ago
0
Release pull

#59 viklund closed 7 years ago
0
Normalize vcf in a separate process

#58 viklund closed 7 years ago
0
Feature/more mask files

#57 viklund closed 8 years ago
0
Feature/vt for annotation

#56 viklund closed 8 years ago
0
Feature/mult runner

#55 viklund closed 8 years ago
0
Ability to run on several bamfiles

#54 viklund closed 7 years ago
3
Screen events based on custom mask file

#53 viklund closed 7 years ago
1
Hotfix/v0.2.1

#52 viklund closed 8 years ago
0