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Hello!
I recently discovered your GToTree and have found it super helpful for my master's project and your clear instillation and instructions have been a huge help in getting it too work on my lap…
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Hello!
Thank you for providing such a useful tool. I have an autotetraploid genome. Can I also use ribotin to assemble the rDNA region? In addition, my tetraploid genome cannot be assembled well usin…
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**Describe the bug**
Hello, I'm trying to run SCENIC+ using SnakeMake in a linux machine (centos 9), on the tutorial dataset.
I ran scATAC-seq preprocessing in python (using pycistopic, using the tu…
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Thank you so much for your tool! I have genome files and annotation GFF files for two species, and I mainly want to use TOGA to identify orthologs between them. However, when I run it, the gene IDs an…
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- **Process this after processing EBI files** (#840)
The previous Alliance of Genome Resources Disease dataset were for `mouse` and `rat` only and dataset without info header. The previous file was…
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The bug is:
pgap.py: error: Invalid Command Line Argument Error: A YAML file argument cannot be used in combination with either the -s/--organism or -g/--genome arguments. The -s/--organism and the -…
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Hi Shujun,
I'm trying to wrap up some work on the Hesperis matronalis genome and am having a problem with panEDTA - it keeps timing out. I've cranked up the RAM to a terabyte and it still just runs…
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@percyfal has applied bio2zarr to a spruce dataset, and it would be an excellent addition to the paper as a further case study.
A notable thing about Norway spruce is the genome size (19Gbp). AFAIK…
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### Description of the bug
Dear @FriederikeHanssen,
I am experiencing problems running Control-FREEC on my WXS data from matched normal/tumor samples.
I have used sarek on the same samples to perfor…
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Hello,
I am trying to upload a custom genome to HiGlass, i've been looking at the data preparation for gene annotation uploads but I am confused how to set up the .db file that is produced at the …